miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26280 5' -59.7 NC_005345.2 + 44951 0.65 0.440857
Target:  5'- ----aCAGGCgCGGGAGGGgggcgcuuuggcguAUCCGAGg -3'
miRNA:   3'- aacugGUCCGgGCCCUCCU--------------UGGGUUC- -5'
26280 5' -59.7 NC_005345.2 + 6035 0.66 0.424643
Target:  5'- -gGGCCAccGGUCCGGGAcgc-CCCAGGa -3'
miRNA:   3'- aaCUGGU--CCGGGCCCUccuuGGGUUC- -5'
26280 5' -59.7 NC_005345.2 + 30000 0.66 0.415273
Target:  5'- -cGGCCGGgGUCCGGGuGGcGCgCCAu- -3'
miRNA:   3'- aaCUGGUC-CGGGCCCuCCuUG-GGUuc -5'
26280 5' -59.7 NC_005345.2 + 44541 0.66 0.415273
Target:  5'- -cGACCAGGUacgCCGcGAGcGggUCCGAGu -3'
miRNA:   3'- aaCUGGUCCG---GGCcCUC-CuuGGGUUC- -5'
26280 5' -59.7 NC_005345.2 + 25707 0.66 0.396919
Target:  5'- gUGACC-GGUCCGGacGGcGAACCCGAc -3'
miRNA:   3'- aACUGGuCCGGGCCc-UC-CUUGGGUUc -5'
26280 5' -59.7 NC_005345.2 + 10619 0.67 0.38794
Target:  5'- -cGGCCGgucGGCCCGGGucGAgcagcacgcgugACUCAGGg -3'
miRNA:   3'- aaCUGGU---CCGGGCCCucCU------------UGGGUUC- -5'
26280 5' -59.7 NC_005345.2 + 17050 0.67 0.379095
Target:  5'- cUGcCCGaGCCCGaGGucGAACCCGAGc -3'
miRNA:   3'- aACuGGUcCGGGC-CCucCUUGGGUUC- -5'
26280 5' -59.7 NC_005345.2 + 15050 0.67 0.379095
Target:  5'- --aGCCAuccGGCCCGGcGcAGGAACUCGAu -3'
miRNA:   3'- aacUGGU---CCGGGCC-C-UCCUUGGGUUc -5'
26280 5' -59.7 NC_005345.2 + 7147 0.67 0.379095
Target:  5'- --cACguGGCCCGGGAcGGGucggACCCGc- -3'
miRNA:   3'- aacUGguCCGGGCCCU-CCU----UGGGUuc -5'
26280 5' -59.7 NC_005345.2 + 30270 0.67 0.379095
Target:  5'- -aGGCCGGGCUCGuc--GAGCCCGAGc -3'
miRNA:   3'- aaCUGGUCCGGGCccucCUUGGGUUC- -5'
26280 5' -59.7 NC_005345.2 + 21687 0.67 0.360967
Target:  5'- --cGCCccccucaGGGCCCGGGAGGuGCUgCGGGg -3'
miRNA:   3'- aacUGG-------UCCGGGCCCUCCuUGG-GUUC- -5'
26280 5' -59.7 NC_005345.2 + 42934 0.67 0.353384
Target:  5'- -gGugCAGGUaUCGGGAGGuGgCCAGGg -3'
miRNA:   3'- aaCugGUCCG-GGCCCUCCuUgGGUUC- -5'
26280 5' -59.7 NC_005345.2 + 31182 0.68 0.336941
Target:  5'- -aGGCCGcGGCCCGGcAGGcGgCCGAGc -3'
miRNA:   3'- aaCUGGU-CCGGGCCcUCCuUgGGUUC- -5'
26280 5' -59.7 NC_005345.2 + 30102 0.68 0.336941
Target:  5'- -cGACCAcGGCCagggCGGcGAGGcggagcagcGGCCCGAGg -3'
miRNA:   3'- aaCUGGU-CCGG----GCC-CUCC---------UUGGGUUC- -5'
26280 5' -59.7 NC_005345.2 + 27467 0.68 0.331319
Target:  5'- ---cCCGGGCCCugaggggggcgggGGGAGGGagucacccccaccccGCCCGAGc -3'
miRNA:   3'- aacuGGUCCGGG-------------CCCUCCU---------------UGGGUUC- -5'
26280 5' -59.7 NC_005345.2 + 44516 0.68 0.328931
Target:  5'- -aGGCgAcGGCCCGGauaucGAGcGAACCCGGGc -3'
miRNA:   3'- aaCUGgU-CCGGGCC-----CUC-CUUGGGUUC- -5'
26280 5' -59.7 NC_005345.2 + 17081 0.69 0.276821
Target:  5'- -aGGCCGaGCCCGaGGucGAGCCCGAa -3'
miRNA:   3'- aaCUGGUcCGGGC-CCucCUUGGGUUc -5'
26280 5' -59.7 NC_005345.2 + 22764 0.7 0.243784
Target:  5'- -cGAUCGGGCacucggucaccUCGGGAGGGAUCCGc- -3'
miRNA:   3'- aaCUGGUCCG-----------GGCCCUCCUUGGGUuc -5'
26280 5' -59.7 NC_005345.2 + 34591 0.7 0.225578
Target:  5'- -cGGCCGGGCCCgugccguaccgGGcGAGGAGCCa--- -3'
miRNA:   3'- aaCUGGUCCGGG-----------CC-CUCCUUGGguuc -5'
26280 5' -59.7 NC_005345.2 + 21744 0.71 0.192622
Target:  5'- --aACC-GGCCCGGGAGGGcCCCu-- -3'
miRNA:   3'- aacUGGuCCGGGCCCUCCUuGGGuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.