miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26281 3' -64.4 NC_005345.2 + 4116 0.67 0.203653
Target:  5'- -cCCCgAGCgGuuGGCguucgagcgGCUGCUCGCgGCg -3'
miRNA:   3'- uaGGG-UCG-CggCCG---------CGACGAGCGgUG- -5'
26281 3' -64.4 NC_005345.2 + 19062 0.67 0.203653
Target:  5'- -aCCCGGcCGUcuCGGgGCcgUGCUCGCCGa -3'
miRNA:   3'- uaGGGUC-GCG--GCCgCG--ACGAGCGGUg -5'
26281 3' -64.4 NC_005345.2 + 27026 0.67 0.203653
Target:  5'- --aCCA-CGUCGacgagucuGUGCUGCUCGCCACc -3'
miRNA:   3'- uagGGUcGCGGC--------CGCGACGAGCGGUG- -5'
26281 3' -64.4 NC_005345.2 + 23998 0.67 0.198457
Target:  5'- aGUCgCCGuuCGUCGGCGCgaucgcGCUCGCCGa -3'
miRNA:   3'- -UAG-GGUc-GCGGCCGCGa-----CGAGCGGUg -5'
26281 3' -64.4 NC_005345.2 + 3871 0.67 0.198457
Target:  5'- -aCCCGGaCGCCGaGUGcCUGCagCGCgGCg -3'
miRNA:   3'- uaGGGUC-GCGGC-CGC-GACGa-GCGgUG- -5'
26281 3' -64.4 NC_005345.2 + 38537 0.67 0.198457
Target:  5'- -aCCCGGgcCGaCCGGCcgcgccGCUGCUCguGCCACc -3'
miRNA:   3'- uaGGGUC--GC-GGCCG------CGACGAG--CGGUG- -5'
26281 3' -64.4 NC_005345.2 + 3865 0.67 0.198457
Target:  5'- --aUCGGCGUCGGCgucccugcGCUGCUCuCCGCc -3'
miRNA:   3'- uagGGUCGCGGCCG--------CGACGAGcGGUG- -5'
26281 3' -64.4 NC_005345.2 + 39267 0.67 0.198457
Target:  5'- cGUUCguGCG-CGGCGCgucgggacUGCUCGaCCGCg -3'
miRNA:   3'- -UAGGguCGCgGCCGCG--------ACGAGC-GGUG- -5'
26281 3' -64.4 NC_005345.2 + 33590 0.67 0.193378
Target:  5'- uGUCgCGGuCGCCGGUGCcGCcguguucucCGCCGCg -3'
miRNA:   3'- -UAGgGUC-GCGGCCGCGaCGa--------GCGGUG- -5'
26281 3' -64.4 NC_005345.2 + 25352 0.67 0.193378
Target:  5'- -gCCCgAGCGUCGGCaGCucucccucaUGCUCcggGCCGCg -3'
miRNA:   3'- uaGGG-UCGCGGCCG-CG---------ACGAG---CGGUG- -5'
26281 3' -64.4 NC_005345.2 + 773 0.67 0.193378
Target:  5'- cUCCCAGCGCa-GCGCcgucGCcUCGCCcCa -3'
miRNA:   3'- uAGGGUCGCGgcCGCGa---CG-AGCGGuG- -5'
26281 3' -64.4 NC_005345.2 + 18522 0.67 0.192876
Target:  5'- cGUCCuCGGCGCCaugugcaccggugGGCuGCUcggggcGCUCGCCGg -3'
miRNA:   3'- -UAGG-GUCGCGG-------------CCG-CGA------CGAGCGGUg -5'
26281 3' -64.4 NC_005345.2 + 29219 0.67 0.188413
Target:  5'- uGUCCC-GCGaugaGGCGCUGCcguucaUCGcCCGCg -3'
miRNA:   3'- -UAGGGuCGCgg--CCGCGACG------AGC-GGUG- -5'
26281 3' -64.4 NC_005345.2 + 39411 0.67 0.188413
Target:  5'- -gCCCgggAGCGUCGGCGC-GgUCGCgGCc -3'
miRNA:   3'- uaGGG---UCGCGGCCGCGaCgAGCGgUG- -5'
26281 3' -64.4 NC_005345.2 + 5229 0.67 0.188413
Target:  5'- --nCCGGCcugaucGCCGacGCGCUGCgCGCCGCc -3'
miRNA:   3'- uagGGUCG------CGGC--CGCGACGaGCGGUG- -5'
26281 3' -64.4 NC_005345.2 + 21341 0.67 0.18356
Target:  5'- gGUCCUcGC-CCGuGCGCgGCUugCGCCACa -3'
miRNA:   3'- -UAGGGuCGcGGC-CGCGaCGA--GCGGUG- -5'
26281 3' -64.4 NC_005345.2 + 6941 0.68 0.178819
Target:  5'- uUCCCggucgucaugguGGUGCCGGCGaucGCUuCGCUGCg -3'
miRNA:   3'- uAGGG------------UCGCGGCCGCga-CGA-GCGGUG- -5'
26281 3' -64.4 NC_005345.2 + 28161 0.68 0.178819
Target:  5'- -gCCCGGU--CGGCGUUcCUCGCCGCg -3'
miRNA:   3'- uaGGGUCGcgGCCGCGAcGAGCGGUG- -5'
26281 3' -64.4 NC_005345.2 + 8881 0.68 0.178819
Target:  5'- cUCuCCGGacucaugccCGCCGGCGCcccguccccGCUCGCCAg -3'
miRNA:   3'- uAG-GGUC---------GCGGCCGCGa--------CGAGCGGUg -5'
26281 3' -64.4 NC_005345.2 + 15604 0.68 0.174644
Target:  5'- --gCCuGCGCCGaGCGUcgucagcaugccgcgGCUCGCCGCc -3'
miRNA:   3'- uagGGuCGCGGC-CGCGa--------------CGAGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.