miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26281 5' -56.3 NC_005345.2 + 27018 1.06 0.001111
Target:  5'- gUAGCGCGACCACGUCGACGAGUCUGUg -3'
miRNA:   3'- -AUCGCGCUGGUGCAGCUGCUCAGACA- -5'
26281 5' -56.3 NC_005345.2 + 41533 0.73 0.248485
Target:  5'- gAGCgucucgGCGACCugGUCGACGAcGUCg-- -3'
miRNA:   3'- aUCG------CGCUGGugCAGCUGCU-CAGaca -5'
26281 5' -56.3 NC_005345.2 + 38426 0.73 0.254993
Target:  5'- gAGCGCGGCCAUccgGcCGACGAG-CUGc -3'
miRNA:   3'- aUCGCGCUGGUG---CaGCUGCUCaGACa -5'
26281 5' -56.3 NC_005345.2 + 7319 0.71 0.333532
Target:  5'- cGGUGCGACgGCGUCGACaaugccgugcgcaaGGGUCUc- -3'
miRNA:   3'- aUCGCGCUGgUGCAGCUG--------------CUCAGAca -5'
26281 5' -56.3 NC_005345.2 + 30875 0.71 0.335972
Target:  5'- cAGCGCGACgCACagaUCGGCGAGUggCUGc -3'
miRNA:   3'- aUCGCGCUG-GUGc--AGCUGCUCA--GACa -5'
26281 5' -56.3 NC_005345.2 + 31223 0.71 0.35257
Target:  5'- gGGUGCGGCCGgGUguaCGGCGGGUCcGg -3'
miRNA:   3'- aUCGCGCUGGUgCA---GCUGCUCAGaCa -5'
26281 5' -56.3 NC_005345.2 + 10614 0.71 0.361085
Target:  5'- cGGCGCGGCCG-GUCGGCccGGGUCg-- -3'
miRNA:   3'- aUCGCGCUGGUgCAGCUG--CUCAGaca -5'
26281 5' -56.3 NC_005345.2 + 20866 0.7 0.378539
Target:  5'- gGGCGCGAgCuuGUCGACGAG-CUu- -3'
miRNA:   3'- aUCGCGCUgGugCAGCUGCUCaGAca -5'
26281 5' -56.3 NC_005345.2 + 24011 0.7 0.387475
Target:  5'- cGGCGCGAUCGCGcUCGcCGAGgcgUGUg -3'
miRNA:   3'- aUCGCGCUGGUGC-AGCuGCUCag-ACA- -5'
26281 5' -56.3 NC_005345.2 + 34724 0.7 0.391089
Target:  5'- gAGCGCGACCucgaucgcccggcagGCGUCGGCGAcGUg--- -3'
miRNA:   3'- aUCGCGCUGG---------------UGCAGCUGCU-CAgaca -5'
26281 5' -56.3 NC_005345.2 + 38980 0.7 0.40576
Target:  5'- cGGCGCGACCAcCGUCGc---GUCUGc -3'
miRNA:   3'- aUCGCGCUGGU-GCAGCugcuCAGACa -5'
26281 5' -56.3 NC_005345.2 + 25146 0.7 0.40576
Target:  5'- gAGCGCGAUCGCGcCGACGAa----- -3'
miRNA:   3'- aUCGCGCUGGUGCaGCUGCUcagaca -5'
26281 5' -56.3 NC_005345.2 + 22796 0.69 0.443908
Target:  5'- -cGCGCGAUCcucgGCGgggGGCGGGUCUGa -3'
miRNA:   3'- auCGCGCUGG----UGCag-CUGCUCAGACa -5'
26281 5' -56.3 NC_005345.2 + 3795 0.68 0.494282
Target:  5'- ---gGCGAUCACGUCGACGGG-Ca-- -3'
miRNA:   3'- aucgCGCUGGUGCAGCUGCUCaGaca -5'
26281 5' -56.3 NC_005345.2 + 3149 0.68 0.504673
Target:  5'- -cGUGcCGACgGCGUCGGCGAGcUCg-- -3'
miRNA:   3'- auCGC-GCUGgUGCAGCUGCUC-AGaca -5'
26281 5' -56.3 NC_005345.2 + 7986 0.68 0.515157
Target:  5'- -cGUGcCGuCCGCGUUGACG-GUCUGc -3'
miRNA:   3'- auCGC-GCuGGUGCAGCUGCuCAGACa -5'
26281 5' -56.3 NC_005345.2 + 18045 0.68 0.515157
Target:  5'- --aCGCGGCCACGUugCGGCGGGUg-GUg -3'
miRNA:   3'- aucGCGCUGGUGCA--GCUGCUCAgaCA- -5'
26281 5' -56.3 NC_005345.2 + 39443 0.68 0.515157
Target:  5'- cGGCGCGGCuCACG-CGGCGGcccgCUGa -3'
miRNA:   3'- aUCGCGCUG-GUGCaGCUGCUca--GACa -5'
26281 5' -56.3 NC_005345.2 + 39967 0.68 0.524667
Target:  5'- cAGCGCGauuccucGCCACGcUCGcCGAGUCc-- -3'
miRNA:   3'- aUCGCGC-------UGGUGC-AGCuGCUCAGaca -5'
26281 5' -56.3 NC_005345.2 + 12784 0.68 0.525728
Target:  5'- gAGCGCGcCCGCGUacgCGGCGAaaGUCggGUc -3'
miRNA:   3'- aUCGCGCuGGUGCA---GCUGCU--CAGa-CA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.