miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26282 3' -58.9 NC_005345.2 + 19210 0.66 0.541801
Target:  5'- cCCCGAcgUCGAgCCG--GUCCUCGCc-- -3'
miRNA:   3'- -GGGCU--AGCUgGGCagCAGGAGCGccu -5'
26282 3' -58.9 NC_005345.2 + 36936 0.66 0.541801
Target:  5'- gUCCGGcCGACCgCGgcgaGUCCUCGCu-- -3'
miRNA:   3'- -GGGCUaGCUGG-GCag--CAGGAGCGccu -5'
26282 3' -58.9 NC_005345.2 + 39466 0.67 0.521414
Target:  5'- gCUGAUCGGCCUGcagcCGgcggCgCUCGCGGu -3'
miRNA:   3'- gGGCUAGCUGGGCa---GCa---G-GAGCGCCu -5'
26282 3' -58.9 NC_005345.2 + 13959 0.67 0.521414
Target:  5'- gCCCGcugCGAUCCGUCGaa--CGCGGGc -3'
miRNA:   3'- -GGGCua-GCUGGGCAGCaggaGCGCCU- -5'
26282 3' -58.9 NC_005345.2 + 30800 0.67 0.511333
Target:  5'- aCCGAcuggucgaccUCGACCCGggcCGaCgUCGCGGc -3'
miRNA:   3'- gGGCU----------AGCUGGGCa--GCaGgAGCGCCu -5'
26282 3' -58.9 NC_005345.2 + 34520 0.67 0.511333
Target:  5'- gUCGAggCGGgCCG-CGgCCUCGCGGGc -3'
miRNA:   3'- gGGCUa-GCUgGGCaGCaGGAGCGCCU- -5'
26282 3' -58.9 NC_005345.2 + 36837 0.67 0.508324
Target:  5'- aCCGAUCGGCgCCGcgcacucggggcacUCGaUCCcgaGCGGAc -3'
miRNA:   3'- gGGCUAGCUG-GGC--------------AGC-AGGag-CGCCU- -5'
26282 3' -58.9 NC_005345.2 + 11571 0.67 0.501333
Target:  5'- gCCCGGcagcUCGACgaCGggCG-CCUCGCGGu -3'
miRNA:   3'- -GGGCU----AGCUGg-GCa-GCaGGAGCGCCu -5'
26282 3' -58.9 NC_005345.2 + 22133 0.67 0.49835
Target:  5'- aCCCGAUCGAggaacucgaccgcgUCCG-CGUCC-CGCaGGc -3'
miRNA:   3'- -GGGCUAGCU--------------GGGCaGCAGGaGCGcCU- -5'
26282 3' -58.9 NC_005345.2 + 5335 0.67 0.49142
Target:  5'- gCCUGAUCGACCCGgacgcCGagaaggacaCUCGCGaGGc -3'
miRNA:   3'- -GGGCUAGCUGGGCa----GCag-------GAGCGC-CU- -5'
26282 3' -58.9 NC_005345.2 + 36351 0.67 0.49142
Target:  5'- -gUGAUCGACCCGacuuUCG-CCgcguaCGCGGGc -3'
miRNA:   3'- ggGCUAGCUGGGC----AGCaGGa----GCGCCU- -5'
26282 3' -58.9 NC_005345.2 + 40757 0.67 0.49142
Target:  5'- aCCGGcagCGGCUCGUCGggccggucggCCggCGCGGGc -3'
miRNA:   3'- gGGCUa--GCUGGGCAGCa---------GGa-GCGCCU- -5'
26282 3' -58.9 NC_005345.2 + 42924 0.67 0.481599
Target:  5'- aCCGG-CGACCaGcCGgagcaagagCCUCGCGGAc -3'
miRNA:   3'- gGGCUaGCUGGgCaGCa--------GGAGCGCCU- -5'
26282 3' -58.9 NC_005345.2 + 35902 0.67 0.481599
Target:  5'- gCCGGUCGugCCGacggUCGUcauccagugacgCCggggCGCGGGg -3'
miRNA:   3'- gGGCUAGCugGGC----AGCA------------GGa---GCGCCU- -5'
26282 3' -58.9 NC_005345.2 + 40898 0.67 0.471874
Target:  5'- cCCCGcgcUCGaACCCGgcgaGUCCU-GCGGGu -3'
miRNA:   3'- -GGGCu--AGC-UGGGCag--CAGGAgCGCCU- -5'
26282 3' -58.9 NC_005345.2 + 3095 0.68 0.46225
Target:  5'- gCCUGAUCGACCC-UCGggCC-C-CGGAc -3'
miRNA:   3'- -GGGCUAGCUGGGcAGCa-GGaGcGCCU- -5'
26282 3' -58.9 NC_005345.2 + 24973 0.68 0.46225
Target:  5'- gCCGGUCGaguggcaaguGCCCGUCGUCgaggugCUCGCc-- -3'
miRNA:   3'- gGGCUAGC----------UGGGCAGCAG------GAGCGccu -5'
26282 3' -58.9 NC_005345.2 + 29473 0.68 0.46225
Target:  5'- gCCCGGUCcaACUCGUCGagCUCGuCGGc -3'
miRNA:   3'- -GGGCUAGc-UGGGCAGCagGAGC-GCCu -5'
26282 3' -58.9 NC_005345.2 + 28529 0.68 0.46225
Target:  5'- gCUCGAUCGcCCCGUCGccgagaCUUGCGa- -3'
miRNA:   3'- -GGGCUAGCuGGGCAGCag----GAGCGCcu -5'
26282 3' -58.9 NC_005345.2 + 32273 0.68 0.461293
Target:  5'- uUCCGAaggCgGACCCGcgcgcguUCGUCCUCgaacuGCGGGa -3'
miRNA:   3'- -GGGCUa--G-CUGGGC-------AGCAGGAG-----CGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.