miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26282 5' -52.2 NC_005345.2 + 25549 0.67 0.797891
Target:  5'- aGCUCGACGA-GugGUgGcGCUACuacCGg -3'
miRNA:   3'- -CGAGCUGCUaCugCAgUaCGGUGu--GC- -5'
26282 5' -52.2 NC_005345.2 + 31601 0.67 0.797891
Target:  5'- uGCUCGGCGcgGcccGCGgaucgCAUGgCgACACGg -3'
miRNA:   3'- -CGAGCUGCuaC---UGCa----GUAC-GgUGUGC- -5'
26282 5' -52.2 NC_005345.2 + 15040 0.67 0.797891
Target:  5'- cGCgUCGGCGgcGAUGUC--GCCGuCGCGg -3'
miRNA:   3'- -CG-AGCUGCuaCUGCAGuaCGGU-GUGC- -5'
26282 5' -52.2 NC_005345.2 + 30722 0.68 0.787957
Target:  5'- -aUCGGCGAgGACcugC-UGCCGCACGu -3'
miRNA:   3'- cgAGCUGCUaCUGca-GuACGGUGUGC- -5'
26282 5' -52.2 NC_005345.2 + 39489 0.68 0.787957
Target:  5'- cGCUCG-CGGU-ACGUCAgcccgccCCACACGc -3'
miRNA:   3'- -CGAGCuGCUAcUGCAGUac-----GGUGUGC- -5'
26282 5' -52.2 NC_005345.2 + 22438 0.68 0.787957
Target:  5'- gGCg-GACGuucGGCGaCAUGCCACGCc -3'
miRNA:   3'- -CGagCUGCua-CUGCaGUACGGUGUGc -5'
26282 5' -52.2 NC_005345.2 + 6616 0.68 0.777853
Target:  5'- cGgaCGAUGcucGUGAUGUCGgugccgaGCCGCGCGg -3'
miRNA:   3'- -CgaGCUGC---UACUGCAGUa------CGGUGUGC- -5'
26282 5' -52.2 NC_005345.2 + 35547 0.68 0.767594
Target:  5'- gGCUCGGgcacCGccGGCGggUCGaGCCACACGa -3'
miRNA:   3'- -CGAGCU----GCuaCUGC--AGUaCGGUGUGC- -5'
26282 5' -52.2 NC_005345.2 + 37592 0.68 0.767594
Target:  5'- aGCUgccgGGCGAUGAacuucgcgGUCGUGCUGCGCa -3'
miRNA:   3'- -CGAg---CUGCUACUg-------CAGUACGGUGUGc -5'
26282 5' -52.2 NC_005345.2 + 3320 0.68 0.767594
Target:  5'- uGCuUCGAgGGUGGCGUCAcucggGCUGCGgGc -3'
miRNA:   3'- -CG-AGCUgCUACUGCAGUa----CGGUGUgC- -5'
26282 5' -52.2 NC_005345.2 + 22240 0.68 0.75719
Target:  5'- cGCUCGACGucgacGGCGagGUGCUGC-CGu -3'
miRNA:   3'- -CGAGCUGCua---CUGCagUACGGUGuGC- -5'
26282 5' -52.2 NC_005345.2 + 8025 0.69 0.72523
Target:  5'- aGCUCGACGGgcucGACcUCGcgcaGCUGCACGa -3'
miRNA:   3'- -CGAGCUGCUa---CUGcAGUa---CGGUGUGC- -5'
26282 5' -52.2 NC_005345.2 + 23755 0.69 0.703423
Target:  5'- aGCUagcaaGggGGCGUCAUGCCgugGCGCGg -3'
miRNA:   3'- -CGAgcug-CuaCUGCAGUACGG---UGUGC- -5'
26282 5' -52.2 NC_005345.2 + 45048 0.69 0.700125
Target:  5'- cGCUCGGgGGUGugccCGUCGUGCUcgaccgucggcucgACGCa -3'
miRNA:   3'- -CGAGCUgCUACu---GCAGUACGG--------------UGUGc -5'
26282 5' -52.2 NC_005345.2 + 38319 0.69 0.692405
Target:  5'- aGCUCGGCGccGGCucguGUC-UGCCGCAgGc -3'
miRNA:   3'- -CGAGCUGCuaCUG----CAGuACGGUGUgC- -5'
26282 5' -52.2 NC_005345.2 + 21119 0.7 0.647846
Target:  5'- aGCUCGACGA---CGUCGagGCCuGCGCGc -3'
miRNA:   3'- -CGAGCUGCUacuGCAGUa-CGG-UGUGC- -5'
26282 5' -52.2 NC_005345.2 + 14379 0.7 0.647846
Target:  5'- aGCUCGGCGAccggccggUGcCGaUCcgGCUGCACGu -3'
miRNA:   3'- -CGAGCUGCU--------ACuGC-AGuaCGGUGUGC- -5'
26282 5' -52.2 NC_005345.2 + 24922 0.7 0.636641
Target:  5'- cGCUCGGCG-UGugGgagCA-GCCGcCGCGa -3'
miRNA:   3'- -CGAGCUGCuACugCa--GUaCGGU-GUGC- -5'
26282 5' -52.2 NC_005345.2 + 9960 0.7 0.633279
Target:  5'- aGCUCGcgcGCGGUGAgcucguguaggcguCGUCAuggUGCgACACGg -3'
miRNA:   3'- -CGAGC---UGCUACU--------------GCAGU---ACGgUGUGC- -5'
26282 5' -52.2 NC_005345.2 + 23767 0.7 0.625432
Target:  5'- gGCcggCGGCGAUcGCGUCGagccggcacUGCCACGCc -3'
miRNA:   3'- -CGa--GCUGCUAcUGCAGU---------ACGGUGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.