miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26283 3' -61.8 NC_005345.2 + 37620 0.66 0.354596
Target:  5'- uCGGCGaCCgagagcugaaCGCguacgucgagaccgUCGUCGUCGACACgCUc -3'
miRNA:   3'- -GCCGC-GG----------GCG--------------AGCAGCAGCUGUGgGA- -5'
26283 3' -61.8 NC_005345.2 + 4646 0.67 0.352179
Target:  5'- gGGCcgucGCCUGCUgugccucggcCGUCGccuucgcugcucggcUCGACGCCCg -3'
miRNA:   3'- gCCG----CGGGCGA----------GCAGC---------------AGCUGUGGGa -5'
26283 3' -61.8 NC_005345.2 + 5771 0.67 0.352179
Target:  5'- aGGCgGUCCGCagGUCGgcguacgcgucgacCGGCACCCc -3'
miRNA:   3'- gCCG-CGGGCGagCAGCa-------------GCUGUGGGa -5'
26283 3' -61.8 NC_005345.2 + 21134 0.67 0.348974
Target:  5'- aGGCcuGCgCGCUCcgcaUCcUCGACGCCCUa -3'
miRNA:   3'- gCCG--CGgGCGAGc---AGcAGCUGUGGGA- -5'
26283 3' -61.8 NC_005345.2 + 34347 0.67 0.341054
Target:  5'- -cGCGCCCGCcgcUCGaCGUCGaaGCGCaCCg -3'
miRNA:   3'- gcCGCGGGCG---AGCaGCAGC--UGUG-GGa -5'
26283 3' -61.8 NC_005345.2 + 25930 0.67 0.341054
Target:  5'- cCGGCGagCCGCUCGUCGguugaaggugUGGCACa-- -3'
miRNA:   3'- -GCCGCg-GGCGAGCAGCa---------GCUGUGgga -5'
26283 3' -61.8 NC_005345.2 + 5436 0.67 0.341054
Target:  5'- aCGGCGUUCGUaUCGagGUCGAgGCCg- -3'
miRNA:   3'- -GCCGCGGGCG-AGCagCAGCUgUGGga -5'
26283 3' -61.8 NC_005345.2 + 4749 0.67 0.333264
Target:  5'- cCGG-GCUCGaCUCGgaccUCGaCGGCACCCUc -3'
miRNA:   3'- -GCCgCGGGC-GAGC----AGCaGCUGUGGGA- -5'
26283 3' -61.8 NC_005345.2 + 39800 0.67 0.325605
Target:  5'- cCGGcCGCCCGCagccaccaugCGUCGcacuggUCGcCGCCCg -3'
miRNA:   3'- -GCC-GCGGGCGa---------GCAGC------AGCuGUGGGa -5'
26283 3' -61.8 NC_005345.2 + 40104 0.67 0.325605
Target:  5'- -cGCGCCUGCUCGgUGUC-ACACgCCg -3'
miRNA:   3'- gcCGCGGGCGAGCaGCAGcUGUG-GGa -5'
26283 3' -61.8 NC_005345.2 + 24247 0.67 0.324847
Target:  5'- gCGGUGagaucucUCCGaucaCGUCGUCGGCAUCCUc -3'
miRNA:   3'- -GCCGC-------GGGCga--GCAGCAGCUGUGGGA- -5'
26283 3' -61.8 NC_005345.2 + 34356 0.67 0.318078
Target:  5'- uCGGCGCCgcacuguuCGCgauggaccCGUCGUCGGCGgUCUc -3'
miRNA:   3'- -GCCGCGG--------GCGa-------GCAGCAGCUGUgGGA- -5'
26283 3' -61.8 NC_005345.2 + 5611 0.67 0.318078
Target:  5'- gGGCGCCgGgCUCGUgGcCGACGCg-- -3'
miRNA:   3'- gCCGCGGgC-GAGCAgCaGCUGUGgga -5'
26283 3' -61.8 NC_005345.2 + 42066 0.67 0.318078
Target:  5'- cCGGCuGCUCgGCgacagCGUCGagcuacgCGGCACCCUc -3'
miRNA:   3'- -GCCG-CGGG-CGa----GCAGCa------GCUGUGGGA- -5'
26283 3' -61.8 NC_005345.2 + 45083 0.67 0.310682
Target:  5'- uCGGCGCaccgaggcauaCCGUgucggCGcUCGUCGGCGCCg- -3'
miRNA:   3'- -GCCGCG-----------GGCGa----GC-AGCAGCUGUGGga -5'
26283 3' -61.8 NC_005345.2 + 27855 0.67 0.310682
Target:  5'- gCGGCGU-CGCUCGUCGuacucgUCGAgGuCCCg -3'
miRNA:   3'- -GCCGCGgGCGAGCAGC------AGCUgU-GGGa -5'
26283 3' -61.8 NC_005345.2 + 37263 0.67 0.310682
Target:  5'- gCGGCGgUCGCgUCGUCGUCGagggGCACgUCg -3'
miRNA:   3'- -GCCGCgGGCG-AGCAGCAGC----UGUG-GGa -5'
26283 3' -61.8 NC_005345.2 + 17955 0.68 0.303418
Target:  5'- cCGGCGUCCGCUCGgc--CGcCugCCg -3'
miRNA:   3'- -GCCGCGGGCGAGCagcaGCuGugGGa -5'
26283 3' -61.8 NC_005345.2 + 21052 0.68 0.296286
Target:  5'- cCGGCGaCCGcCUCGUCGaucuucuucUCGACgucgcucauGCCCUc -3'
miRNA:   3'- -GCCGCgGGC-GAGCAGC---------AGCUG---------UGGGA- -5'
26283 3' -61.8 NC_005345.2 + 29213 0.68 0.296286
Target:  5'- gGGCGCgcugCUGCUCGUCGUCucGCugCUc -3'
miRNA:   3'- gCCGCG----GGCGAGCAGCAGc-UGugGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.