Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26283 | 5' | -52.8 | NC_005345.2 | + | 26324 | 1.09 | 0.001434 |
Target: 5'- uCGAGAAUCUGCAGACGCGCCAUGUCAg -3' miRNA: 3'- -GCUCUUAGACGUCUGCGCGGUACAGU- -5' |
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26283 | 5' | -52.8 | NC_005345.2 | + | 30004 | 0.71 | 0.494781 |
Target: 5'- -cGGggUCcgGguGGCGCGCCAUG-CGg -3' miRNA: 3'- gcUCuuAGa-CguCUGCGCGGUACaGU- -5' |
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26283 | 5' | -52.8 | NC_005345.2 | + | 17494 | 0.7 | 0.593862 |
Target: 5'- uCGGGAAggaaCUGCGGGC-CGCCG-GUCGc -3' miRNA: 3'- -GCUCUUa---GACGUCUGcGCGGUaCAGU- -5' |
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26283 | 5' | -52.8 | NC_005345.2 | + | 26897 | 0.69 | 0.609685 |
Target: 5'- uGAGGcgCUGCAGGCGgcgcuCGCCGaccgguacgacgcgcUGUCGg -3' miRNA: 3'- gCUCUuaGACGUCUGC-----GCGGU---------------ACAGU- -5' |
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26283 | 5' | -52.8 | NC_005345.2 | + | 18713 | 0.68 | 0.691054 |
Target: 5'- uCGGGggUgUGCccggucgggauguGGCGCGCCAUGa-- -3' miRNA: 3'- -GCUCuuAgACGu------------CUGCGCGGUACagu -5' |
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26283 | 5' | -52.8 | NC_005345.2 | + | 34375 | 0.68 | 0.706649 |
Target: 5'- cCGGGGcgUUGCAGuCGacgaGCCcgGUCGa -3' miRNA: 3'- -GCUCUuaGACGUCuGCg---CGGuaCAGU- -5' |
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26283 | 5' | -52.8 | NC_005345.2 | + | 37716 | 0.68 | 0.706649 |
Target: 5'- gCGGGAucgcgCUGCGGcGCgGCGCCGgcugGUCGg -3' miRNA: 3'- -GCUCUua---GACGUC-UG-CGCGGUa---CAGU- -5' |
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26283 | 5' | -52.8 | NC_005345.2 | + | 21445 | 0.67 | 0.727566 |
Target: 5'- aGGGG--UUGCAGggcugccgugucgGCGCGCCcgGUCAc -3' miRNA: 3'- gCUCUuaGACGUC-------------UGCGCGGuaCAGU- -5' |
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26283 | 5' | -52.8 | NC_005345.2 | + | 9121 | 0.67 | 0.750256 |
Target: 5'- uCGAaGAUCUGCccaaGCaCGCCAUGUCGg -3' miRNA: 3'- -GCUcUUAGACGuc--UGcGCGGUACAGU- -5' |
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26283 | 5' | -52.8 | NC_005345.2 | + | 22900 | 0.67 | 0.76087 |
Target: 5'- aCGAGAGcgugCcGCAG-CGCGUCAUcGUCGg -3' miRNA: 3'- -GCUCUUa---GaCGUCuGCGCGGUA-CAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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