miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26284 5' -57.1 NC_005345.2 + 1330 0.66 0.570221
Target:  5'- cUGGUUGCCGGcCGGGUCGcGGUa-- -3'
miRNA:   3'- cAUCAGCGGCCaGCUCGGCaUCAggu -5'
26284 5' -57.1 NC_005345.2 + 4319 0.67 0.531741
Target:  5'- -aGGUCGaccugcgucucgacaUCGGcCGAGCCGgGGUCCu -3'
miRNA:   3'- caUCAGC---------------GGCCaGCUCGGCaUCAGGu -5'
26284 5' -57.1 NC_005345.2 + 6237 0.71 0.314196
Target:  5'- cUGGUCGCCGGUaCGAacugugugacacgGCCGgugaacgGGUCCc -3'
miRNA:   3'- cAUCAGCGGCCA-GCU-------------CGGCa------UCAGGu -5'
26284 5' -57.1 NC_005345.2 + 7027 0.73 0.226614
Target:  5'- -gGGUCGCCGGUCGAccgGCCGgcGaUCgAg -3'
miRNA:   3'- caUCAGCGGCCAGCU---CGGCauC-AGgU- -5'
26284 5' -57.1 NC_005345.2 + 7974 0.69 0.399099
Target:  5'- -cGGUCGUCGuGUCGuGCCGUccgcguugacGGUCUg -3'
miRNA:   3'- caUCAGCGGC-CAGCuCGGCA----------UCAGGu -5'
26284 5' -57.1 NC_005345.2 + 8253 0.72 0.278204
Target:  5'- --cGUCGCCGGguUCGAGCgCGgGGUUCAc -3'
miRNA:   3'- cauCAGCGGCC--AGCUCG-GCaUCAGGU- -5'
26284 5' -57.1 NC_005345.2 + 9949 0.69 0.435587
Target:  5'- -cGGUCGCCaacccgcggcccgGGuUCGGGCUGgGGUCCGc -3'
miRNA:   3'- caUCAGCGG-------------CC-AGCUCGGCaUCAGGU- -5'
26284 5' -57.1 NC_005345.2 + 15398 0.66 0.601704
Target:  5'- -gAGUCGUugaccUGGUCGAucgacucGCCGUAGcCCu -3'
miRNA:   3'- caUCAGCG-----GCCAGCU-------CGGCAUCaGGu -5'
26284 5' -57.1 NC_005345.2 + 17053 0.68 0.446223
Target:  5'- cGUAGaaGUCGGUCGAGUCcUGGUCgCGg -3'
miRNA:   3'- -CAUCagCGGCCAGCUCGGcAUCAG-GU- -5'
26284 5' -57.1 NC_005345.2 + 17509 0.66 0.58104
Target:  5'- -gGGcCGCCGGUCGccGGCCGggcgaGGaCCGu -3'
miRNA:   3'- caUCaGCGGCCAGC--UCGGCa----UCaGGU- -5'
26284 5' -57.1 NC_005345.2 + 19026 0.66 0.570221
Target:  5'- --cGUCGCCGccCGAGCCGUcgguacgggGGUCg- -3'
miRNA:   3'- cauCAGCGGCcaGCUCGGCA---------UCAGgu -5'
26284 5' -57.1 NC_005345.2 + 19347 0.73 0.244942
Target:  5'- ---cUCGCCGGgggCGAGCgCGUAGUCg- -3'
miRNA:   3'- caucAGCGGCCa--GCUCG-GCAUCAGgu -5'
26284 5' -57.1 NC_005345.2 + 21263 0.66 0.591901
Target:  5'- --cGUCGuCCGuGUCGucGCCGUcGUCCc -3'
miRNA:   3'- cauCAGC-GGC-CAGCu-CGGCAuCAGGu -5'
26284 5' -57.1 NC_005345.2 + 22381 0.66 0.591901
Target:  5'- -cGGUCGguuccggcUCGGUCGAGCUGUacgggacgggccGGUUCAu -3'
miRNA:   3'- caUCAGC--------GGCCAGCUCGGCA------------UCAGGU- -5'
26284 5' -57.1 NC_005345.2 + 23673 0.66 0.613714
Target:  5'- -gGGUCgcgGCCGGUCGGGCgGg---CCGa -3'
miRNA:   3'- caUCAG---CGGCCAGCUCGgCaucaGGU- -5'
26284 5' -57.1 NC_005345.2 + 26214 1.08 0.000691
Target:  5'- aGUAGUCGCCGGUCGAGCCGUAGUCCAu -3'
miRNA:   3'- -CAUCAGCGGCCAGCUCGGCAUCAGGU- -5'
26284 5' -57.1 NC_005345.2 + 29660 0.66 0.559452
Target:  5'- -aGGUCGCC-GUCGAcGgCGU-GUCCAc -3'
miRNA:   3'- caUCAGCGGcCAGCU-CgGCAuCAGGU- -5'
26284 5' -57.1 NC_005345.2 + 32046 0.73 0.220768
Target:  5'- aUGGcUGCCGGUCGGGCUGcuGUCCGa -3'
miRNA:   3'- cAUCaGCGGCCAGCUCGGCauCAGGU- -5'
26284 5' -57.1 NC_005345.2 + 33595 0.69 0.402751
Target:  5'- -cGGUCGCCGGUgccGCCGUGuucuccgccgcguucGUCCAg -3'
miRNA:   3'- caUCAGCGGCCAgcuCGGCAU---------------CAGGU- -5'
26284 5' -57.1 NC_005345.2 + 34782 0.66 0.613714
Target:  5'- -cGGUCGCCGagcugcGcCGGGUCGcGGUCCu -3'
miRNA:   3'- caUCAGCGGC------CaGCUCGGCaUCAGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.