miRNA display CGI


Results 21 - 40 of 164 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26285 5' -59.9 NC_005345.2 + 3243 0.66 0.459022
Target:  5'- gGCA-GGcGAguGACaaCCGuCUCGCCGUg -3'
miRNA:   3'- aCGUgCC-CUguCUG--GGCuGAGCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 25741 0.66 0.459022
Target:  5'- cGuCGCGGugguGGCAGGCgaaCCGGCUCGaCuCGCg -3'
miRNA:   3'- aC-GUGCC----CUGUCUG---GGCUGAGC-G-GCG- -5'
26285 5' -59.9 NC_005345.2 + 33643 0.66 0.459022
Target:  5'- aGCA--GGACAagagcaacGCCCGACUUGCgGCg -3'
miRNA:   3'- aCGUgcCCUGUc-------UGGGCUGAGCGgCG- -5'
26285 5' -59.9 NC_005345.2 + 31167 0.66 0.459022
Target:  5'- cGaCACGGGAgAucgaggccgcGGCCCGGCagGCgGCc -3'
miRNA:   3'- aC-GUGCCCUgU----------CUGGGCUGagCGgCG- -5'
26285 5' -59.9 NC_005345.2 + 22007 0.66 0.449422
Target:  5'- aGCGCcucGGGCAG-CUCGACgccggccggUGCCGCc -3'
miRNA:   3'- aCGUGc--CCUGUCuGGGCUGa--------GCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 30590 0.66 0.449422
Target:  5'- cGCugGGcGCGcACCCGGCgagCGCCccgaGCa -3'
miRNA:   3'- aCGugCCcUGUcUGGGCUGa--GCGG----CG- -5'
26285 5' -59.9 NC_005345.2 + 18231 0.66 0.449421
Target:  5'- gGUACGGGcucGCccuGGuCCCGgugcuGCUCGCCGg -3'
miRNA:   3'- aCGUGCCC---UG---UCuGGGC-----UGAGCGGCg -5'
26285 5' -59.9 NC_005345.2 + 2122 0.66 0.449421
Target:  5'- aGCuuuuCGGGGuuCGGGCCgCGGCU-GCUGCc -3'
miRNA:   3'- aCGu---GCCCU--GUCUGG-GCUGAgCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 31964 0.66 0.449421
Target:  5'- gGCuguGGGA-AGGCgCCGACUucuaCGCCGCc -3'
miRNA:   3'- aCGug-CCCUgUCUG-GGCUGA----GCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 16594 0.66 0.449421
Target:  5'- cGCuGCGGuGGCGuGGCCCGACccccUCGgCGUc -3'
miRNA:   3'- aCG-UGCC-CUGU-CUGGGCUG----AGCgGCG- -5'
26285 5' -59.9 NC_005345.2 + 6657 0.66 0.445613
Target:  5'- gGCACGGGcgaacgugGCGaucuccucgacgacGGCCuCGGCgucgauaUCGCCGCg -3'
miRNA:   3'- aCGUGCCC--------UGU--------------CUGG-GCUG-------AGCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 3758 0.66 0.439933
Target:  5'- cGCGCGuGGGCuuGGcacacCCCcACUCGCCGg -3'
miRNA:   3'- aCGUGC-CCUGu-CU-----GGGcUGAGCGGCg -5'
26285 5' -59.9 NC_005345.2 + 20342 0.66 0.439933
Target:  5'- cGCGCGGuGCGGACCU----UGCCGUg -3'
miRNA:   3'- aCGUGCCcUGUCUGGGcugaGCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 48493 0.66 0.439933
Target:  5'- cGC-CGGGuuccgcACGGuCCCG-CUCacGCCGCa -3'
miRNA:   3'- aCGuGCCC------UGUCuGGGCuGAG--CGGCG- -5'
26285 5' -59.9 NC_005345.2 + 46782 0.66 0.439933
Target:  5'- gGCccGCGaGGuCGcGACCgGGCUgCGCCGCc -3'
miRNA:   3'- aCG--UGC-CCuGU-CUGGgCUGA-GCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 44049 0.66 0.439933
Target:  5'- gGCAuCGGGAU--GCCgCG-CUCGCgGCg -3'
miRNA:   3'- aCGU-GCCCUGucUGG-GCuGAGCGgCG- -5'
26285 5' -59.9 NC_005345.2 + 4250 0.66 0.439933
Target:  5'- cUGCggaGCGGGACgAGGCCaCG--UUGCUGCg -3'
miRNA:   3'- -ACG---UGCCCUG-UCUGG-GCugAGCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 31878 0.66 0.439933
Target:  5'- cGCGCGcaGACcaGGACCgCGGCgccUGCCGCc -3'
miRNA:   3'- aCGUGCc-CUG--UCUGG-GCUGa--GCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 15558 0.66 0.439933
Target:  5'- -aCACGGcGGCAccggcGACCgCGACa-GCCGCg -3'
miRNA:   3'- acGUGCC-CUGU-----CUGG-GCUGagCGGCG- -5'
26285 5' -59.9 NC_005345.2 + 10160 0.66 0.439933
Target:  5'- gGgAUGGGcGCAGACgCGACgguggucgCGCCGa -3'
miRNA:   3'- aCgUGCCC-UGUCUGgGCUGa-------GCGGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.