miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26286 5' -60.8 NC_005345.2 + 12241 0.66 0.383471
Target:  5'- aCCGCCgAGucGAGCGAGC--AG-GCCCg -3'
miRNA:   3'- -GGCGG-UCu-CUCGCUCGcgUCuCGGGg -5'
26286 5' -60.8 NC_005345.2 + 18799 0.66 0.383471
Target:  5'- gCCGUCGGgcAGGGUGAcggcgGCGCGG-GCCUg -3'
miRNA:   3'- -GGCGGUC--UCUCGCU-----CGCGUCuCGGGg -5'
26286 5' -60.8 NC_005345.2 + 7652 0.67 0.374897
Target:  5'- gCGUgCGGcAGAGCGGcCGCugugaaggGGAGCCCCc -3'
miRNA:   3'- gGCG-GUC-UCUCGCUcGCG--------UCUCGGGG- -5'
26286 5' -60.8 NC_005345.2 + 10660 0.67 0.374897
Target:  5'- aCCGCggacCGGuGGGGCGcGGCGCGGGaaguGCCCg -3'
miRNA:   3'- -GGCG----GUC-UCUCGC-UCGCGUCU----CGGGg -5'
26286 5' -60.8 NC_005345.2 + 10007 0.67 0.374897
Target:  5'- gCGCCGGuGAGCGGGaGC-GAcUCCCa -3'
miRNA:   3'- gGCGGUCuCUCGCUCgCGuCUcGGGG- -5'
26286 5' -60.8 NC_005345.2 + 32514 0.67 0.374897
Target:  5'- uCUGCCGGcGGGCGGcccgaucuGCGCGG-GUCCg -3'
miRNA:   3'- -GGCGGUCuCUCGCU--------CGCGUCuCGGGg -5'
26286 5' -60.8 NC_005345.2 + 3044 0.67 0.366454
Target:  5'- cCCGaCAGGGucgccGCGuggauguccGCGCAG-GCCCCg -3'
miRNA:   3'- -GGCgGUCUCu----CGCu--------CGCGUCuCGGGG- -5'
26286 5' -60.8 NC_005345.2 + 2753 0.67 0.366454
Target:  5'- cCCGCauguGGAGcGCGccacGCGCGGcGGCCUCg -3'
miRNA:   3'- -GGCGg---UCUCuCGCu---CGCGUC-UCGGGG- -5'
26286 5' -60.8 NC_005345.2 + 13369 0.67 0.358142
Target:  5'- uCgGCCAu-GAGC-AGCGCGGGaaucgaguccuGCCCCg -3'
miRNA:   3'- -GgCGGUcuCUCGcUCGCGUCU-----------CGGGG- -5'
26286 5' -60.8 NC_005345.2 + 17541 0.67 0.358142
Target:  5'- gUCGCCAuGcGAuccGCGGGCcgcgccgaGCAGGGCCCg -3'
miRNA:   3'- -GGCGGU-CuCU---CGCUCG--------CGUCUCGGGg -5'
26286 5' -60.8 NC_005345.2 + 36319 0.67 0.358142
Target:  5'- cUCGCCGGuGAuGCG-GCGCAG-GCgaaCCg -3'
miRNA:   3'- -GGCGGUCuCU-CGCuCGCGUCuCGg--GG- -5'
26286 5' -60.8 NC_005345.2 + 17020 0.67 0.355675
Target:  5'- gCCGCC-GAG-GCGAucgcccucgcacccGCGCugcccGAGCCCg -3'
miRNA:   3'- -GGCGGuCUCuCGCU--------------CGCGu----CUCGGGg -5'
26286 5' -60.8 NC_005345.2 + 13606 0.67 0.349964
Target:  5'- cCCGCC----GGCG-GUGCccGAGCCCCg -3'
miRNA:   3'- -GGCGGucucUCGCuCGCGu-CUCGGGG- -5'
26286 5' -60.8 NC_005345.2 + 15228 0.67 0.349964
Target:  5'- aCgGCCGGAcGGGUGuaGGacgugGCAGAGCuCCCa -3'
miRNA:   3'- -GgCGGUCU-CUCGC--UCg----CGUCUCG-GGG- -5'
26286 5' -60.8 NC_005345.2 + 17846 0.67 0.347537
Target:  5'- gCCGCCGGGccccGGCGAcauccccccguggcGCGCAcccGCCCCc -3'
miRNA:   3'- -GGCGGUCUc---UCGCU--------------CGCGUcu-CGGGG- -5'
26286 5' -60.8 NC_005345.2 + 3163 0.67 0.34192
Target:  5'- cCCGCCaccacaccagAGAGAaaGCGAgGCGC-GAGCCa- -3'
miRNA:   3'- -GGCGG----------UCUCU--CGCU-CGCGuCUCGGgg -5'
26286 5' -60.8 NC_005345.2 + 29600 0.67 0.34192
Target:  5'- -gGUgGGAGAuCGGGCGUAGAucGCCCg -3'
miRNA:   3'- ggCGgUCUCUcGCUCGCGUCU--CGGGg -5'
26286 5' -60.8 NC_005345.2 + 12639 0.67 0.34192
Target:  5'- aCGCCAGuucGCcgGGGCGCGGucGGCCgCCg -3'
miRNA:   3'- gGCGGUCucuCG--CUCGCGUC--UCGG-GG- -5'
26286 5' -60.8 NC_005345.2 + 18933 0.67 0.33401
Target:  5'- aCCGCCGGAuGcGCGAucgucGCccgGCAGGGUCCg -3'
miRNA:   3'- -GGCGGUCU-CuCGCU-----CG---CGUCUCGGGg -5'
26286 5' -60.8 NC_005345.2 + 20855 0.67 0.33401
Target:  5'- -aGUCGGAGAgaguGCGggagguAGCGCGcGAGCCCg -3'
miRNA:   3'- ggCGGUCUCU----CGC------UCGCGU-CUCGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.