miRNA display CGI


Results 1 - 20 of 177 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26287 3' -63.1 NC_005345.2 + 11302 0.66 0.330253
Target:  5'- cCGGCCGCGACcgaccgcacAGUcagGGCCCcCGGg-- -3'
miRNA:   3'- cGCCGGCGCUG---------UCG---UCGGGcGCCacu -5'
26287 3' -63.1 NC_005345.2 + 25109 0.66 0.330253
Target:  5'- -gGGCCGCGGCuGCAGgUgaaGGUGAc -3'
miRNA:   3'- cgCCGGCGCUGuCGUCgGgcgCCACU- -5'
26287 3' -63.1 NC_005345.2 + 9936 0.66 0.330253
Target:  5'- aCGGUCagguagGUGucgaGCAGCAGCUcgcgCGCGGUGAg -3'
miRNA:   3'- cGCCGG------CGC----UGUCGUCGG----GCGCCACU- -5'
26287 3' -63.1 NC_005345.2 + 11418 0.66 0.330253
Target:  5'- gGUGGUCGaCGACAGCAgguuGCCCGgaauCGGc-- -3'
miRNA:   3'- -CGCCGGC-GCUGUCGU----CGGGC----GCCacu -5'
26287 3' -63.1 NC_005345.2 + 41435 0.66 0.330253
Target:  5'- aGCGGCagcucguacCGGCGGCA-CUCGCGGUcGAg -3'
miRNA:   3'- -CGCCGgc-------GCUGUCGUcGGGCGCCA-CU- -5'
26287 3' -63.1 NC_005345.2 + 32968 0.66 0.325667
Target:  5'- cCGGCCGCGuccGCguaguccucggcgcaGGCGGCCgG-GGUGGc -3'
miRNA:   3'- cGCCGGCGC---UG---------------UCGUCGGgCgCCACU- -5'
26287 3' -63.1 NC_005345.2 + 4193 0.66 0.322636
Target:  5'- gGCaGGCCGUGcaggcggcGCGGCAGaugCUGCGGUa- -3'
miRNA:   3'- -CG-CCGGCGC--------UGUCGUCg--GGCGCCAcu -5'
26287 3' -63.1 NC_005345.2 + 33433 0.66 0.322636
Target:  5'- -gGGUgGCG--GGCGGCCCGCaaGGUGu -3'
miRNA:   3'- cgCCGgCGCugUCGUCGGGCG--CCACu -5'
26287 3' -63.1 NC_005345.2 + 43474 0.66 0.322636
Target:  5'- cGCGGCgcagCGCGGuCGGCucgguccgGGCCCgccggGCGGUGc -3'
miRNA:   3'- -CGCCG----GCGCU-GUCG--------UCGGG-----CGCCACu -5'
26287 3' -63.1 NC_005345.2 + 4981 0.66 0.322636
Target:  5'- cGCGGCCGaucgGACGaacGC-GCUCGCcauGGUGAc -3'
miRNA:   3'- -CGCCGGCg---CUGU---CGuCGGGCG---CCACU- -5'
26287 3' -63.1 NC_005345.2 + 39350 0.66 0.322636
Target:  5'- cCGGCCGCGACacAGCGGCgaacaCGCuGUc- -3'
miRNA:   3'- cGCCGGCGCUG--UCGUCGg----GCGcCAcu -5'
26287 3' -63.1 NC_005345.2 + 35343 0.66 0.321882
Target:  5'- cGCGGCCgGCGcguggauguggaACAGCguccucaAGCCCGCGu--- -3'
miRNA:   3'- -CGCCGG-CGC------------UGUCG-------UCGGGCGCcacu -5'
26287 3' -63.1 NC_005345.2 + 5206 0.66 0.315151
Target:  5'- cCGGCa-CGGCcgGGCAGCUCGCGGc-- -3'
miRNA:   3'- cGCCGgcGCUG--UCGUCGGGCGCCacu -5'
26287 3' -63.1 NC_005345.2 + 34390 0.66 0.315151
Target:  5'- gGCGGucuCCGCgcugggcaagGugGGCGGCgCCGCGGa-- -3'
miRNA:   3'- -CGCC---GGCG----------CugUCGUCG-GGCGCCacu -5'
26287 3' -63.1 NC_005345.2 + 12593 0.66 0.315151
Target:  5'- uGCGGCCGCGAUcGuCGGCUaCGCGc--- -3'
miRNA:   3'- -CGCCGGCGCUGuC-GUCGG-GCGCcacu -5'
26287 3' -63.1 NC_005345.2 + 14507 0.66 0.315151
Target:  5'- cGCGacGCCgaGCGGCAGCAGCCaCGCc---- -3'
miRNA:   3'- -CGC--CGG--CGCUGUCGUCGG-GCGccacu -5'
26287 3' -63.1 NC_005345.2 + 31337 0.66 0.307797
Target:  5'- aGgGGCaCGcCGGCAGggaugaucCGGCUCGgGGUGAu -3'
miRNA:   3'- -CgCCG-GC-GCUGUC--------GUCGGGCgCCACU- -5'
26287 3' -63.1 NC_005345.2 + 46378 0.66 0.307797
Target:  5'- -gGGCgGCGGCgAGCAGCCaCGCcGUccGAa -3'
miRNA:   3'- cgCCGgCGCUG-UCGUCGG-GCGcCA--CU- -5'
26287 3' -63.1 NC_005345.2 + 41018 0.66 0.307797
Target:  5'- aGCGGCCaagagccgucGaCGACGGCGGCCgGguCGGUc- -3'
miRNA:   3'- -CGCCGG----------C-GCUGUCGUCGGgC--GCCAcu -5'
26287 3' -63.1 NC_005345.2 + 15643 0.66 0.307797
Target:  5'- cCGGUCGgGGCcGCaaugcgaccgGGCCCGgUGGUGAc -3'
miRNA:   3'- cGCCGGCgCUGuCG----------UCGGGC-GCCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.