miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26287 5' -54.5 NC_005345.2 + 13486 0.67 0.707604
Target:  5'- cGG-CACCGcgucGGUGCGGUggcgCGgcGAGCa -3'
miRNA:   3'- -CCaGUGGC----CCACGUCGa---GCauCUUGg -5'
26287 5' -54.5 NC_005345.2 + 34210 0.67 0.696768
Target:  5'- cGUCACCauGGGgcaGCAGUUCGcccGGGGCg -3'
miRNA:   3'- cCAGUGG--CCCa--CGUCGAGCa--UCUUGg -5'
26287 5' -54.5 NC_005345.2 + 28111 0.67 0.68587
Target:  5'- cGGUCGCCGGcGcGCGuGC-CGaGGAACg -3'
miRNA:   3'- -CCAGUGGCC-CaCGU-CGaGCaUCUUGg -5'
26287 5' -54.5 NC_005345.2 + 34841 0.67 0.68587
Target:  5'- -aUCACCGGGaucGCGgcGCUCGU--GACCc -3'
miRNA:   3'- ccAGUGGCCCa--CGU--CGAGCAucUUGG- -5'
26287 5' -54.5 NC_005345.2 + 40069 0.67 0.674919
Target:  5'- cGGUCGCCGGcGacgGCGGCccggauaaagUCGc-GGACCu -3'
miRNA:   3'- -CCAGUGGCC-Ca--CGUCG----------AGCauCUUGG- -5'
26287 5' -54.5 NC_005345.2 + 27762 0.67 0.673822
Target:  5'- cGUCGCgcugcaggacgaaCGGGcGCAGCUCGguguACCa -3'
miRNA:   3'- cCAGUG-------------GCCCaCGUCGAGCaucuUGG- -5'
26287 5' -54.5 NC_005345.2 + 22319 0.67 0.663928
Target:  5'- cGGcgCGCCGGGUGCcGGCagcagugaugCGgcGAGCa -3'
miRNA:   3'- -CCa-GUGGCCCACG-UCGa---------GCauCUUGg -5'
26287 5' -54.5 NC_005345.2 + 10252 0.68 0.641866
Target:  5'- --aCACCGGG-GCAGCguUCGUucacGCCg -3'
miRNA:   3'- ccaGUGGCCCaCGUCG--AGCAucu-UGG- -5'
26287 5' -54.5 NC_005345.2 + 30701 0.68 0.641866
Target:  5'- cGG-CugCGGGUggccGCGGUgaUCGgcgAGGACCu -3'
miRNA:   3'- -CCaGugGCCCA----CGUCG--AGCa--UCUUGG- -5'
26287 5' -54.5 NC_005345.2 + 14892 0.68 0.641866
Target:  5'- cGGUCAa-GGGU-CAGgUCG-AGGACCg -3'
miRNA:   3'- -CCAGUggCCCAcGUCgAGCaUCUUGG- -5'
26287 5' -54.5 NC_005345.2 + 9724 0.68 0.641866
Target:  5'- cGUCGCCGGGgucgaGCGGgUCGgccucGAugCu -3'
miRNA:   3'- cCAGUGGCCCa----CGUCgAGCau---CUugG- -5'
26287 5' -54.5 NC_005345.2 + 38906 0.68 0.619768
Target:  5'- cGG-CGcCCGGGUgaccGCGGggCGUGGAACUu -3'
miRNA:   3'- -CCaGU-GGCCCA----CGUCgaGCAUCUUGG- -5'
26287 5' -54.5 NC_005345.2 + 15223 0.68 0.607628
Target:  5'- cGGUUACggccggaCGGGUGUAGgaCGUggcAGAGCUc -3'
miRNA:   3'- -CCAGUG-------GCCCACGUCgaGCA---UCUUGG- -5'
26287 5' -54.5 NC_005345.2 + 45566 0.68 0.607628
Target:  5'- aGGUCggggcggGCCGGuUGCGGC-CG-GGGGCCg -3'
miRNA:   3'- -CCAG-------UGGCCcACGUCGaGCaUCUUGG- -5'
26287 5' -54.5 NC_005345.2 + 39591 0.68 0.597714
Target:  5'- aGGUgCGCgGGGacuacgagggGCAGCUCGgcguguGGACCc -3'
miRNA:   3'- -CCA-GUGgCCCa---------CGUCGAGCau----CUUGG- -5'
26287 5' -54.5 NC_005345.2 + 5935 0.68 0.597714
Target:  5'- gGGUCGCCGuGGUcguucucaggGaCAGCggCGUGGGgaaACCa -3'
miRNA:   3'- -CCAGUGGC-CCA----------C-GUCGa-GCAUCU---UGG- -5'
26287 5' -54.5 NC_005345.2 + 18248 0.69 0.586726
Target:  5'- cGUCACCGGGuUGCAGaUC--AGcAGCCa -3'
miRNA:   3'- cCAGUGGCCC-ACGUCgAGcaUC-UUGG- -5'
26287 5' -54.5 NC_005345.2 + 37105 0.69 0.575777
Target:  5'- cGG-CGCCGGucucCAGCUCGgcaGGGGCCa -3'
miRNA:   3'- -CCaGUGGCCcac-GUCGAGCa--UCUUGG- -5'
26287 5' -54.5 NC_005345.2 + 36073 0.69 0.575777
Target:  5'- aGGUC-CCGGGgaagauGCUCGgcGGGCUg -3'
miRNA:   3'- -CCAGuGGCCCacgu--CGAGCauCUUGG- -5'
26287 5' -54.5 NC_005345.2 + 9292 0.69 0.564875
Target:  5'- cGGUCaggauguccuGCCaGGUGCGGC-CGgccGAGCCc -3'
miRNA:   3'- -CCAG----------UGGcCCACGUCGaGCau-CUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.