miRNA display CGI


Results 21 - 40 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26288 3' -59 NC_005345.2 + 38166 0.66 0.533579
Target:  5'- -uUCGGGcCGcCGaUCCGUACgaCGGGCa -3'
miRNA:   3'- ccAGCCU-GCuGC-GGGCGUGaaGCCCG- -5'
26288 3' -59 NC_005345.2 + 28675 0.66 0.533579
Target:  5'- cGGUCGGGgccacaggcgaGGCGUUgGCuAC-UCGGGCg -3'
miRNA:   3'- -CCAGCCUg----------CUGCGGgCG-UGaAGCCCG- -5'
26288 3' -59 NC_005345.2 + 5298 0.66 0.533579
Target:  5'- --cCGGcCGACGCCC-CGuCgacCGGGCa -3'
miRNA:   3'- ccaGCCuGCUGCGGGcGU-Gaa-GCCCG- -5'
26288 3' -59 NC_005345.2 + 18767 0.66 0.533579
Target:  5'- aGGUaCGccucGACcuGCGCCCGCcgcggGCUgccgUCGGGCa -3'
miRNA:   3'- -CCA-GC----CUGc-UGCGGGCG-----UGA----AGCCCG- -5'
26288 3' -59 NC_005345.2 + 23249 0.66 0.533579
Target:  5'- gGGUCGuacuCGACGa-UGCACUcgcUCGGGUg -3'
miRNA:   3'- -CCAGCcu--GCUGCggGCGUGA---AGCCCG- -5'
26288 3' -59 NC_005345.2 + 46025 0.66 0.523337
Target:  5'- cGGUCGGACGggGCgGCCCcucgGUAUgucCGGGg -3'
miRNA:   3'- -CCAGCCUGC--UG-CGGG----CGUGaa-GCCCg -5'
26288 3' -59 NC_005345.2 + 36003 0.66 0.523337
Target:  5'- --gCGGAcuCGGCGUCagcccccuugaCGCACggCGGGCg -3'
miRNA:   3'- ccaGCCU--GCUGCGG-----------GCGUGaaGCCCG- -5'
26288 3' -59 NC_005345.2 + 35106 0.66 0.523337
Target:  5'- uGGUgCGGGCGugGCgggUGUugUUcauggCGGGCg -3'
miRNA:   3'- -CCA-GCCUGCugCGg--GCGugAA-----GCCCG- -5'
26288 3' -59 NC_005345.2 + 9938 0.66 0.523337
Target:  5'- cGUCGGccCGACGgucgccaaCCCGCGgCccgggUUCGGGCu -3'
miRNA:   3'- cCAGCCu-GCUGC--------GGGCGU-G-----AAGCCCG- -5'
26288 3' -59 NC_005345.2 + 32093 0.66 0.523337
Target:  5'- gGGcUCGGGuuCGAC-CUCGgGC-UCGGGCa -3'
miRNA:   3'- -CC-AGCCU--GCUGcGGGCgUGaAGCCCG- -5'
26288 3' -59 NC_005345.2 + 2766 0.66 0.523337
Target:  5'- -uUCGGACGGCGUggcugcucgccgCCGCcCUUCGuGaGCc -3'
miRNA:   3'- ccAGCCUGCUGCG------------GGCGuGAAGC-C-CG- -5'
26288 3' -59 NC_005345.2 + 3342 0.66 0.520279
Target:  5'- cGGUCGcGACGACGgacgacCUCGCGCagugguucuacgagcUGGGCg -3'
miRNA:   3'- -CCAGC-CUGCUGC------GGGCGUGaa-------------GCCCG- -5'
26288 3' -59 NC_005345.2 + 11699 0.66 0.513172
Target:  5'- aGG-CGGAuCGACGgCCG-ACcagCGGGCc -3'
miRNA:   3'- -CCaGCCU-GCUGCgGGCgUGaa-GCCCG- -5'
26288 3' -59 NC_005345.2 + 32519 0.66 0.513172
Target:  5'- cGG-CGGGCGGCccgaUCUGCGCgggucCGGGCc -3'
miRNA:   3'- -CCaGCCUGCUGc---GGGCGUGaa---GCCCG- -5'
26288 3' -59 NC_005345.2 + 14413 0.66 0.513172
Target:  5'- cGUCGc-CGACGCCUGC----CGGGCg -3'
miRNA:   3'- cCAGCcuGCUGCGGGCGugaaGCCCG- -5'
26288 3' -59 NC_005345.2 + 12776 0.66 0.51216
Target:  5'- cGGccgCGGAgcGCGCCCGCguacgcgGCgaaagUCGGGUc -3'
miRNA:   3'- -CCa--GCCUgcUGCGGGCG-------UGa----AGCCCG- -5'
26288 3' -59 NC_005345.2 + 15841 0.66 0.503089
Target:  5'- --aUGGGCGcGgGCCCGCucGCggUGGGCg -3'
miRNA:   3'- ccaGCCUGC-UgCGGGCG--UGaaGCCCG- -5'
26288 3' -59 NC_005345.2 + 1207 0.66 0.503089
Target:  5'- cGGcccgCGGGCcACGCCgCGCGgUaCGGGUc -3'
miRNA:   3'- -CCa---GCCUGcUGCGG-GCGUgAaGCCCG- -5'
26288 3' -59 NC_005345.2 + 40120 0.66 0.503089
Target:  5'- cGGUCGccguccuucuGGCGGgucuugaucCGCaCCGUGCUgccgUCGGGCa -3'
miRNA:   3'- -CCAGC----------CUGCU---------GCG-GGCGUGA----AGCCCG- -5'
26288 3' -59 NC_005345.2 + 39017 0.66 0.503089
Target:  5'- --gCGGcCGcCGCCUGUACcUCGGGg -3'
miRNA:   3'- ccaGCCuGCuGCGGGCGUGaAGCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.