miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26289 5' -52.5 NC_005345.2 + 9445 0.67 0.774494
Target:  5'- aGCG-GUCGcUCucgugcCACCCGGGCg -3'
miRNA:   3'- cUGCaCAGC-AGuuucuuGUGGGCCCG- -5'
26289 5' -52.5 NC_005345.2 + 7084 0.67 0.773468
Target:  5'- cGACGcUGUCGcCGAGcagccgguaacucGGGCugCCGGuGCg -3'
miRNA:   3'- -CUGC-ACAGCaGUUU-------------CUUGugGGCC-CG- -5'
26289 5' -52.5 NC_005345.2 + 33868 0.68 0.76417
Target:  5'- aGGCGUucggCGUCGAcguggGGGACGCcgcucgcgcggCCGGGCa -3'
miRNA:   3'- -CUGCAca--GCAGUU-----UCUUGUG-----------GGCCCG- -5'
26289 5' -52.5 NC_005345.2 + 10072 0.68 0.76417
Target:  5'- cGACGc--CGUCGAGGcgcucguCAUCCGGGCc -3'
miRNA:   3'- -CUGCacaGCAGUUUCuu-----GUGGGCCCG- -5'
26289 5' -52.5 NC_005345.2 + 931 0.68 0.753706
Target:  5'- cGGCGUcacGUCGUCGAGGucgcGCACuaGGuGCu -3'
miRNA:   3'- -CUGCA---CAGCAGUUUCu---UGUGggCC-CG- -5'
26289 5' -52.5 NC_005345.2 + 29447 0.68 0.753706
Target:  5'- cGugG-GUCGcCAcguacGAGGACACgaaCGGGCa -3'
miRNA:   3'- -CugCaCAGCaGU-----UUCUUGUGg--GCCCG- -5'
26289 5' -52.5 NC_005345.2 + 28623 0.68 0.732402
Target:  5'- gGGCGUGUCGcCGcAGGcCGauCCCGGGg -3'
miRNA:   3'- -CUGCACAGCaGUuUCUuGU--GGGCCCg -5'
26289 5' -52.5 NC_005345.2 + 1534 0.68 0.732402
Target:  5'- --gGUGUCGggcgCGucGAGCcaaCCGGGCa -3'
miRNA:   3'- cugCACAGCa---GUuuCUUGug-GGCCCG- -5'
26289 5' -52.5 NC_005345.2 + 24126 0.68 0.721588
Target:  5'- cGACGUcGUaCGUCGc-GAACGCCUcGGCg -3'
miRNA:   3'- -CUGCA-CA-GCAGUuuCUUGUGGGcCCG- -5'
26289 5' -52.5 NC_005345.2 + 16039 0.68 0.721588
Target:  5'- -cCGUcGUUGUCGccGAGCGCgauccggguCCGGGCg -3'
miRNA:   3'- cuGCA-CAGCAGUuuCUUGUG---------GGCCCG- -5'
26289 5' -52.5 NC_005345.2 + 7229 0.68 0.721588
Target:  5'- cGACcgGUGUCGUCGgcGAcgACCaGGGCg -3'
miRNA:   3'- -CUG--CACAGCAGUuuCUugUGGgCCCG- -5'
26289 5' -52.5 NC_005345.2 + 19105 0.69 0.699693
Target:  5'- --gGUGUCGUCGGcccACGCgUGGGCg -3'
miRNA:   3'- cugCACAGCAGUUucuUGUGgGCCCG- -5'
26289 5' -52.5 NC_005345.2 + 43072 0.69 0.699693
Target:  5'- -uCGUGUCGUCGGgcAGcAGcCACUCGGGa -3'
miRNA:   3'- cuGCACAGCAGUU--UC-UU-GUGGGCCCg -5'
26289 5' -52.5 NC_005345.2 + 24266 0.69 0.677526
Target:  5'- cACGUcGUCGgcauccucggUCAAGGGugACCCGGcGUg -3'
miRNA:   3'- cUGCA-CAGC----------AGUUUCUugUGGGCC-CG- -5'
26289 5' -52.5 NC_005345.2 + 2523 0.69 0.677526
Target:  5'- aAUGUGUCaacggCGAcGGGGCACCCGGcGCc -3'
miRNA:   3'- cUGCACAGca---GUU-UCUUGUGGGCC-CG- -5'
26289 5' -52.5 NC_005345.2 + 29743 0.69 0.676412
Target:  5'- aGAgGg--CGUCAcGGAGCACCCcgcggguGGGCa -3'
miRNA:   3'- -CUgCacaGCAGUuUCUUGUGGG-------CCCG- -5'
26289 5' -52.5 NC_005345.2 + 38890 0.69 0.666369
Target:  5'- --aGUGgaCGgCAGAGAucgGCGCCCGGGUg -3'
miRNA:   3'- cugCACa-GCaGUUUCU---UGUGGGCCCG- -5'
26289 5' -52.5 NC_005345.2 + 34360 0.69 0.655179
Target:  5'- ----cGaCGUCGAAGcGCACCgGGGCg -3'
miRNA:   3'- cugcaCaGCAGUUUCuUGUGGgCCCG- -5'
26289 5' -52.5 NC_005345.2 + 25703 0.69 0.655179
Target:  5'- cGGCGUGaccgGUCc-GGAcggcgaacccgACACCCGGGCg -3'
miRNA:   3'- -CUGCACag--CAGuuUCU-----------UGUGGGCCCG- -5'
26289 5' -52.5 NC_005345.2 + 33487 0.7 0.63162
Target:  5'- cGACGgugcagGUCGgcgCGGAGAucggcgaGCAgUCCGGGCa -3'
miRNA:   3'- -CUGCa-----CAGCa--GUUUCU-------UGU-GGGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.