miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26291 3' -54.6 NC_005345.2 + 46668 0.67 0.617595
Target:  5'- cGUGUACAucgagcucgcucGCGCGCAGgaCUgggCaGGCCu -3'
miRNA:   3'- -CACGUGU------------CGCGCGUCaaGAa--GcUCGG- -5'
26291 3' -54.6 NC_005345.2 + 34371 0.67 0.617595
Target:  5'- -cGCACcggGGCGuUGCAG-UCgaCGAGCCc -3'
miRNA:   3'- caCGUG---UCGC-GCGUCaAGaaGCUCGG- -5'
26291 3' -54.6 NC_005345.2 + 27159 0.67 0.617595
Target:  5'- cGUGCgGCAGCGgcccgaGCAGUaccgggcaUCggcgCGGGCCg -3'
miRNA:   3'- -CACG-UGUCGCg-----CGUCA--------AGaa--GCUCGG- -5'
26291 3' -54.6 NC_005345.2 + 1120 0.67 0.617595
Target:  5'- -aGCACAGcCGCGUAGccUCcccgGAGCCu -3'
miRNA:   3'- caCGUGUC-GCGCGUCa-AGaag-CUCGG- -5'
26291 3' -54.6 NC_005345.2 + 35051 0.67 0.617595
Target:  5'- -aGCAguGCGCGCAGguggUCccaguggUCGAGg- -3'
miRNA:   3'- caCGUguCGCGCGUCa---AGa------AGCUCgg -5'
26291 3' -54.6 NC_005345.2 + 45835 0.67 0.60637
Target:  5'- cGUGCACGGCG-GCGGcg---CGGGCg -3'
miRNA:   3'- -CACGUGUCGCgCGUCaagaaGCUCGg -5'
26291 3' -54.6 NC_005345.2 + 17282 0.68 0.595168
Target:  5'- cUGguCuGCGCGCGGgUCUugUCG-GCCg -3'
miRNA:   3'- cACguGuCGCGCGUCaAGA--AGCuCGG- -5'
26291 3' -54.6 NC_005345.2 + 42074 0.68 0.583999
Target:  5'- cGUGCACuuccgggccucGGcCGCGUAGUcCggcCGGGCCg -3'
miRNA:   3'- -CACGUG-----------UC-GCGCGUCAaGaa-GCUCGG- -5'
26291 3' -54.6 NC_005345.2 + 16858 0.68 0.572872
Target:  5'- -gGCGCAGCugcagGCGCGGUaCggcCGAGCg -3'
miRNA:   3'- caCGUGUCG-----CGCGUCAaGaa-GCUCGg -5'
26291 3' -54.6 NC_005345.2 + 22002 0.68 0.572872
Target:  5'- -cGCGCAGCGCcucggGCAGcUCgaCGccGGCCg -3'
miRNA:   3'- caCGUGUCGCG-----CGUCaAGaaGC--UCGG- -5'
26291 3' -54.6 NC_005345.2 + 3428 0.68 0.572872
Target:  5'- -gGCGCGGCG-GCGGgcggCgaugCGGGCCc -3'
miRNA:   3'- caCGUGUCGCgCGUCaa--Gaa--GCUCGG- -5'
26291 3' -54.6 NC_005345.2 + 1427 0.68 0.572872
Target:  5'- aUGCACAGCuggcagcCGCAGcUCUUCGcccucaacuGCCg -3'
miRNA:   3'- cACGUGUCGc------GCGUCaAGAAGCu--------CGG- -5'
26291 3' -54.6 NC_005345.2 + 11654 0.68 0.561796
Target:  5'- cUGCACGGCG-GCGGUagcggccaaCUUCGGGgCg -3'
miRNA:   3'- cACGUGUCGCgCGUCAa--------GAAGCUCgG- -5'
26291 3' -54.6 NC_005345.2 + 16559 0.68 0.561796
Target:  5'- aGUGguCAuGgGCGCGGgucucCUUCGAGCg -3'
miRNA:   3'- -CACguGU-CgCGCGUCaa---GAAGCUCGg -5'
26291 3' -54.6 NC_005345.2 + 35842 0.68 0.550778
Target:  5'- -gGCGCGGCGgGUGGcUCgguUCGGGCg -3'
miRNA:   3'- caCGUGUCGCgCGUCaAGa--AGCUCGg -5'
26291 3' -54.6 NC_005345.2 + 30590 0.68 0.550778
Target:  5'- -cGCugGGCGCGCAcc-CggCGAGCg -3'
miRNA:   3'- caCGugUCGCGCGUcaaGaaGCUCGg -5'
26291 3' -54.6 NC_005345.2 + 4274 0.69 0.539828
Target:  5'- -gGCGguGCGgGCAGcUCgggcUCGGGCUg -3'
miRNA:   3'- caCGUguCGCgCGUCaAGa---AGCUCGG- -5'
26291 3' -54.6 NC_005345.2 + 23628 0.69 0.528952
Target:  5'- -gGCACGGCuGCGCAugguGUUCgcCGAGgCg -3'
miRNA:   3'- caCGUGUCG-CGCGU----CAAGaaGCUCgG- -5'
26291 3' -54.6 NC_005345.2 + 10166 0.69 0.528952
Target:  5'- -gGCGCAGaCGCGaCGGUgg-UCGcGCCg -3'
miRNA:   3'- caCGUGUC-GCGC-GUCAagaAGCuCGG- -5'
26291 3' -54.6 NC_005345.2 + 43910 0.69 0.518158
Target:  5'- --aCGCGGCGCGCAGcgcgUCggCGAucagGCCg -3'
miRNA:   3'- cacGUGUCGCGCGUCa---AGaaGCU----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.