miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26291 5' -62.6 NC_005345.2 + 27483 0.67 0.293556
Target:  5'- gGCGGgGGGAGggagucacccccACCcCGCCCgaGCCGCu -3'
miRNA:   3'- -UGCCgCCUUCa-----------UGGcGCGGGg-CGGUG- -5'
26291 5' -62.6 NC_005345.2 + 31285 0.67 0.287943
Target:  5'- cACGGCGGAccccgAGgauucccGCCGgGCgCUGCUGCg -3'
miRNA:   3'- -UGCCGCCU-----UCa------UGGCgCGgGGCGGUG- -5'
26291 5' -62.6 NC_005345.2 + 15274 0.67 0.287943
Target:  5'- uCGGCGGggGUGggagcucguuUUGCGUUCgGCUACu -3'
miRNA:   3'- uGCCGCCuuCAU----------GGCGCGGGgCGGUG- -5'
26291 5' -62.6 NC_005345.2 + 8315 0.67 0.281047
Target:  5'- cGCGGCGGAacuGGUcGCCGaacaCCCCccguucccguGCCACu -3'
miRNA:   3'- -UGCCGCCU---UCA-UGGCgc--GGGG----------CGGUG- -5'
26291 5' -62.6 NC_005345.2 + 14944 0.67 0.281047
Target:  5'- gGCGGCGGcgAAGgAUCGCGCCgCgGCUg- -3'
miRNA:   3'- -UGCCGCC--UUCaUGGCGCGG-GgCGGug -5'
26291 5' -62.6 NC_005345.2 + 32191 0.67 0.281047
Target:  5'- cCGGCcGAGGUGCCGCaggcGUCUCGUCGa -3'
miRNA:   3'- uGCCGcCUUCAUGGCG----CGGGGCGGUg -5'
26291 5' -62.6 NC_005345.2 + 5408 0.67 0.281047
Target:  5'- cCGGCGGucg-GCCgaGCGUCUCGCCGa -3'
miRNA:   3'- uGCCGCCuucaUGG--CGCGGGGCGGUg -5'
26291 5' -62.6 NC_005345.2 + 46439 0.67 0.281047
Target:  5'- -gGGCGGGAGacauCgGCGCCgCCGacacCCACa -3'
miRNA:   3'- ugCCGCCUUCau--GgCGCGG-GGC----GGUG- -5'
26291 5' -62.6 NC_005345.2 + 14579 0.67 0.280364
Target:  5'- cACGGCGGAcAGUgcgggcggcACCuuuuccagcagcaGCGCCCCGaCCu- -3'
miRNA:   3'- -UGCCGCCU-UCA---------UGG-------------CGCGGGGC-GGug -5'
26291 5' -62.6 NC_005345.2 + 4248 0.67 0.280364
Target:  5'- cGCuGCGGAgcGGgacgaggccacguUGCUGCGCCUCGCgACg -3'
miRNA:   3'- -UGcCGCCU--UC-------------AUGGCGCGGGGCGgUG- -5'
26291 5' -62.6 NC_005345.2 + 1148 0.67 0.279003
Target:  5'- uUGGCGGucGUgacugcucgguccgGCUGCGCCUC-CCACc -3'
miRNA:   3'- uGCCGCCuuCA--------------UGGCGCGGGGcGGUG- -5'
26291 5' -62.6 NC_005345.2 + 7531 0.67 0.279003
Target:  5'- gGCGGCGGucguGGUGCUGauCCCgaccagguauccgaCGCCGCc -3'
miRNA:   3'- -UGCCGCCu---UCAUGGCgcGGG--------------GCGGUG- -5'
26291 5' -62.6 NC_005345.2 + 48856 0.67 0.274282
Target:  5'- -gGGCGGGgcGGUGCUGCGUgCC-CUACc -3'
miRNA:   3'- ugCCGCCU--UCAUGGCGCGgGGcGGUG- -5'
26291 5' -62.6 NC_005345.2 + 8339 0.67 0.274282
Target:  5'- cCGGCGGcGGUGCa-CGCCCCGgUCGu -3'
miRNA:   3'- uGCCGCCuUCAUGgcGCGGGGC-GGUg -5'
26291 5' -62.6 NC_005345.2 + 496 0.67 0.274282
Target:  5'- uGCGcCGGAAGUuguGCCGgGUCaggaCGCCGCc -3'
miRNA:   3'- -UGCcGCCUUCA---UGGCgCGGg---GCGGUG- -5'
26291 5' -62.6 NC_005345.2 + 883 0.67 0.269624
Target:  5'- cGCGGuCGGGcggcaucAGUucguccggaugcuucGCCgGCGCCUCGCCAa -3'
miRNA:   3'- -UGCC-GCCU-------UCA---------------UGG-CGCGGGGCGGUg -5'
26291 5' -62.6 NC_005345.2 + 21812 0.67 0.267648
Target:  5'- gGCGGCGGccGAGgguCCGCagaucGCCUCucaGCCACu -3'
miRNA:   3'- -UGCCGCC--UUCau-GGCG-----CGGGG---CGGUG- -5'
26291 5' -62.6 NC_005345.2 + 3253 0.67 0.267648
Target:  5'- cGCGGCGcucggugccGAGGUACCccgugcgcagcuGCGUgCCGuCCACg -3'
miRNA:   3'- -UGCCGC---------CUUCAUGG------------CGCGgGGC-GGUG- -5'
26291 5' -62.6 NC_005345.2 + 34205 0.67 0.267648
Target:  5'- cGCGGCGcGAuccuucGCCGcCGCCcgcugcagCCGCCGCg -3'
miRNA:   3'- -UGCCGC-CUuca---UGGC-GCGG--------GGCGGUG- -5'
26291 5' -62.6 NC_005345.2 + 13212 0.67 0.261144
Target:  5'- cGCGGCGaGcacaccCCGCGCCCCggcGUCACg -3'
miRNA:   3'- -UGCCGC-Cuucau-GGCGCGGGG---CGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.