miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26292 5' -60.2 NC_005345.2 + 38363 0.66 0.403814
Target:  5'- -cGUGCGGAcgGCCGAGCaaGCGGCa--- -3'
miRNA:   3'- caCGCGCCU--CGGCUCGg-UGCUGacua -5'
26292 5' -60.2 NC_005345.2 + 31161 0.67 0.354838
Target:  5'- gGUGCGCGGGGUCGAaguGCgggugcguacucgggCGCGGCgGGUg -3'
miRNA:   3'- -CACGCGCCUCGGCU---CG---------------GUGCUGaCUA- -5'
26292 5' -60.2 NC_005345.2 + 6627 0.67 0.351504
Target:  5'- cGUGaUGuCGGuGCCGAGCCGCG-CgGAg -3'
miRNA:   3'- -CAC-GC-GCCuCGGCUCGGUGCuGaCUa -5'
26292 5' -60.2 NC_005345.2 + 41288 0.67 0.342451
Target:  5'- gGUGUGCuGGGGCCGccucgguGCCggcgccgGCGGCUGGa -3'
miRNA:   3'- -CACGCG-CCUCGGCu------CGG-------UGCUGACUa -5'
26292 5' -60.2 NC_005345.2 + 9161 0.67 0.327212
Target:  5'- -gGCGCGGGuGCaCGGGCCggucguguGCGAgCUGAUc -3'
miRNA:   3'- caCGCGCCU-CG-GCUCGG--------UGCU-GACUA- -5'
26292 5' -60.2 NC_005345.2 + 2115 0.67 0.327212
Target:  5'- -gGCGCgaagcuuuucGGGGuUCGGGCCGCGGCUGc- -3'
miRNA:   3'- caCGCG----------CCUC-GGCUCGGUGCUGACua -5'
26292 5' -60.2 NC_005345.2 + 21427 0.67 0.319396
Target:  5'- -gGCGCGaGGCCG-GCCGCGuCUGc- -3'
miRNA:   3'- caCGCGCcUCGGCuCGGUGCuGACua -5'
26292 5' -60.2 NC_005345.2 + 11836 0.68 0.311721
Target:  5'- cGUGgGCGaGGUCGAcGCCACGGCgUGGg -3'
miRNA:   3'- -CACgCGCcUCGGCU-CGGUGCUG-ACUa -5'
26292 5' -60.2 NC_005345.2 + 2050 0.68 0.304187
Target:  5'- -gGCGCGGcccGgCGGGCCGCGGC-GAa -3'
miRNA:   3'- caCGCGCCu--CgGCUCGGUGCUGaCUa -5'
26292 5' -60.2 NC_005345.2 + 3365 0.68 0.288822
Target:  5'- -cGCGCGGAGCauCGAgagcgauacguguGCCACGGCggcGAg -3'
miRNA:   3'- caCGCGCCUCG--GCU-------------CGGUGCUGa--CUa -5'
26292 5' -60.2 NC_005345.2 + 33317 0.68 0.275452
Target:  5'- cUGCGCGGuguAGCuCGGGCCGuCGGCcgGAg -3'
miRNA:   3'- cACGCGCC---UCG-GCUCGGU-GCUGa-CUa -5'
26292 5' -60.2 NC_005345.2 + 2576 0.69 0.261917
Target:  5'- cGUGCuCGGGGCCGAgGCUgACGGCgaggGAUa -3'
miRNA:   3'- -CACGcGCCUCGGCU-CGG-UGCUGa---CUA- -5'
26292 5' -60.2 NC_005345.2 + 16870 0.69 0.242637
Target:  5'- -gGCGCGGuacGGCCGAGCgugGCGGCgGAa -3'
miRNA:   3'- caCGCGCC---UCGGCUCGg--UGCUGaCUa -5'
26292 5' -60.2 NC_005345.2 + 9311 0.7 0.23045
Target:  5'- -gGUGCGGccGGCCGAGCCcGCGAUgccGAg -3'
miRNA:   3'- caCGCGCC--UCGGCUCGG-UGCUGa--CUa -5'
26292 5' -60.2 NC_005345.2 + 8716 0.71 0.177065
Target:  5'- cGUGCGCGG-GCCGAucGCCGCGuC-GGUg -3'
miRNA:   3'- -CACGCGCCuCGGCU--CGGUGCuGaCUA- -5'
26292 5' -60.2 NC_005345.2 + 31255 0.72 0.169619
Target:  5'- uGUGCGCGGcGCCGugaucggcgacuacGCCACGGCgGAc -3'
miRNA:   3'- -CACGCGCCuCGGCu-------------CGGUGCUGaCUa -5'
26292 5' -60.2 NC_005345.2 + 29364 0.73 0.131298
Target:  5'- -gGCGU--AGCCGAGCCACGGCUcGGUg -3'
miRNA:   3'- caCGCGccUCGGCUCGGUGCUGA-CUA- -5'
26292 5' -60.2 NC_005345.2 + 19090 0.74 0.111186
Target:  5'- -cGUGCGG-GCCGuGCCGUGGCUGAUg -3'
miRNA:   3'- caCGCGCCuCGGCuCGGUGCUGACUA- -5'
26292 5' -60.2 NC_005345.2 + 9021 0.75 0.09942
Target:  5'- gGUGCGCGGgaucagAGCCGGGUCgGCGugUGAc -3'
miRNA:   3'- -CACGCGCC------UCGGCUCGG-UGCugACUa -5'
26292 5' -60.2 NC_005345.2 + 20601 1.05 0.000495
Target:  5'- cGUGCGCGGAGCCGAGCCACGACUGAUc -3'
miRNA:   3'- -CACGCGCCUCGGCUCGGUGCUGACUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.