miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26293 3' -58.3 NC_005345.2 + 37686 0.66 0.556047
Target:  5'- uGAUGucGUcGGCCGUGGGCcGCCaguccUGCg -3'
miRNA:   3'- gCUACcaCAaCUGGCGCCCG-CGG-----ACG- -5'
26293 3' -58.3 NC_005345.2 + 18857 0.66 0.534952
Target:  5'- gCGAgcaGGUGcgGGCCGCGaucgacagcgcaGGUGuCCUGUg -3'
miRNA:   3'- -GCUa--CCACaaCUGGCGC------------CCGC-GGACG- -5'
26293 3' -58.3 NC_005345.2 + 6361 0.66 0.514146
Target:  5'- gCGccGG-GUUGGCCGCGGugGCG-UUGCg -3'
miRNA:   3'- -GCuaCCaCAACUGGCGCC--CGCgGACG- -5'
26293 3' -58.3 NC_005345.2 + 8943 0.66 0.514146
Target:  5'- -cGUGGgcg-GGCUGCGGGUGCUcggGCu -3'
miRNA:   3'- gcUACCacaaCUGGCGCCCGCGGa--CG- -5'
26293 3' -58.3 NC_005345.2 + 7867 0.66 0.514146
Target:  5'- ---aGGUGUacagccUG-CCGUGGGaCGCCgagGCg -3'
miRNA:   3'- gcuaCCACA------ACuGGCGCCC-GCGGa--CG- -5'
26293 3' -58.3 NC_005345.2 + 3922 0.66 0.514146
Target:  5'- -cGUGGcUGacGACCGCacccccgugaccGGGCGUCUGUa -3'
miRNA:   3'- gcUACC-ACaaCUGGCG------------CCCGCGGACG- -5'
26293 3' -58.3 NC_005345.2 + 15706 0.66 0.503866
Target:  5'- aGGUGGUGacacACCuuGCGGGCcGCCcGCc -3'
miRNA:   3'- gCUACCACaac-UGG--CGCCCG-CGGaCG- -5'
26293 3' -58.3 NC_005345.2 + 24999 0.66 0.503866
Target:  5'- uCGA-GGUGcucGCCGCGGuCGCCgagGCg -3'
miRNA:   3'- -GCUaCCACaacUGGCGCCcGCGGa--CG- -5'
26293 3' -58.3 NC_005345.2 + 6259 0.67 0.493677
Target:  5'- cCGgcGGUucuuccuCCGUGGGCGCCggGCg -3'
miRNA:   3'- -GCuaCCAcaacu--GGCGCCCGCGGa-CG- -5'
26293 3' -58.3 NC_005345.2 + 34911 0.67 0.483582
Target:  5'- gGGUGGgagagGgcGugCGCaGGGCggcggcgaggGCCUGCu -3'
miRNA:   3'- gCUACCa----CaaCugGCG-CCCG----------CGGACG- -5'
26293 3' -58.3 NC_005345.2 + 46068 0.67 0.483582
Target:  5'- uCGAUcaGGcGgccggGGCCGCcGGgGCCUGCg -3'
miRNA:   3'- -GCUA--CCaCaa---CUGGCGcCCgCGGACG- -5'
26293 3' -58.3 NC_005345.2 + 45359 0.67 0.453919
Target:  5'- ---cGGUGUgGACCGUGcGGCGCggGUc -3'
miRNA:   3'- gcuaCCACAaCUGGCGC-CCGCGgaCG- -5'
26293 3' -58.3 NC_005345.2 + 48739 0.67 0.444253
Target:  5'- cCGcAUGGaGUggUGGCCGCGGGUGCa--- -3'
miRNA:   3'- -GC-UACCaCA--ACUGGCGCCCGCGgacg -5'
26293 3' -58.3 NC_005345.2 + 5347 0.68 0.434702
Target:  5'- ---cGGU----GCCGUGGGCGCgCUGCc -3'
miRNA:   3'- gcuaCCAcaacUGGCGCCCGCG-GACG- -5'
26293 3' -58.3 NC_005345.2 + 13523 0.68 0.415965
Target:  5'- uCGAUcGUGUUcuggGACCGCGGGCaGCUg-- -3'
miRNA:   3'- -GCUAcCACAA----CUGGCGCCCG-CGGacg -5'
26293 3' -58.3 NC_005345.2 + 40064 0.69 0.377405
Target:  5'- aGcgGGgaccgucaccGUcGACCGCGGGCagcaauggcgccgcGCCUGCu -3'
miRNA:   3'- gCuaCCa---------CAaCUGGCGCCCG--------------CGGACG- -5'
26293 3' -58.3 NC_005345.2 + 9349 0.69 0.37136
Target:  5'- aCGcAUGGUG---GCUGCGGGCgGCCggGCu -3'
miRNA:   3'- -GC-UACCACaacUGGCGCCCG-CGGa-CG- -5'
26293 3' -58.3 NC_005345.2 + 15384 0.69 0.37136
Target:  5'- gCGggGGUacUUGGCC-CGGGUgcuGCCUGCg -3'
miRNA:   3'- -GCuaCCAc-AACUGGcGCCCG---CGGACG- -5'
26293 3' -58.3 NC_005345.2 + 38061 0.69 0.346207
Target:  5'- gCGGUGGcGggGauugcGCCGcCGGGCGCCacGCa -3'
miRNA:   3'- -GCUACCaCaaC-----UGGC-GCCCGCGGa-CG- -5'
26293 3' -58.3 NC_005345.2 + 23949 0.69 0.338099
Target:  5'- cCGggGGUGaUUcACCGCGGGCuGCUgucGCg -3'
miRNA:   3'- -GCuaCCAC-AAcUGGCGCCCG-CGGa--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.