miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26293 5' -54.8 NC_005345.2 + 38397 0.66 0.76542
Target:  5'- -gGCAGGGGCUCGGCGucGGCGacgacaUCGa -3'
miRNA:   3'- caUGUCCUUGGGCUGC--UCGCag----AGCc -5'
26293 5' -54.8 NC_005345.2 + 20598 0.66 0.76542
Target:  5'- --cCGGGG--CCGGCGGGCGcucgcaagUCUCGGc -3'
miRNA:   3'- cauGUCCUugGGCUGCUCGC--------AGAGCC- -5'
26293 5' -54.8 NC_005345.2 + 21595 0.66 0.755201
Target:  5'- -cGCcGGggUCCGACGAGCcgaugCcgCGGg -3'
miRNA:   3'- caUGuCCuuGGGCUGCUCGca---Ga-GCC- -5'
26293 5' -54.8 NC_005345.2 + 39080 0.66 0.755201
Target:  5'- -gAguGGAcgcucGCCgCGACGucGGCGUCgUCGGu -3'
miRNA:   3'- caUguCCU-----UGG-GCUGC--UCGCAG-AGCC- -5'
26293 5' -54.8 NC_005345.2 + 30590 0.66 0.755201
Target:  5'- -cGCuGGGcgcgcACCCGGCGAGCGcCcCGa -3'
miRNA:   3'- caUGuCCU-----UGGGCUGCUCGCaGaGCc -5'
26293 5' -54.8 NC_005345.2 + 4349 0.66 0.755201
Target:  5'- --cCGGGGuccuGCCUcgGGCGGGCGggccgCUCGGu -3'
miRNA:   3'- cauGUCCU----UGGG--CUGCUCGCa----GAGCC- -5'
26293 5' -54.8 NC_005345.2 + 17853 0.66 0.755201
Target:  5'- -aGCAGc-GCCCGGCGGGaaucCUCGGg -3'
miRNA:   3'- caUGUCcuUGGGCUGCUCgca-GAGCC- -5'
26293 5' -54.8 NC_005345.2 + 31236 0.66 0.744858
Target:  5'- uGUACGGcGggUCCGGgguCGGGUGcgcaCUCGGg -3'
miRNA:   3'- -CAUGUC-CuuGGGCU---GCUCGCa---GAGCC- -5'
26293 5' -54.8 NC_005345.2 + 29980 0.66 0.744858
Target:  5'- ---gAGGGGCUCGuCG-GCGUcCUCGGc -3'
miRNA:   3'- caugUCCUUGGGCuGCuCGCA-GAGCC- -5'
26293 5' -54.8 NC_005345.2 + 15492 0.66 0.744858
Target:  5'- gGUGCA-GAugUCGGCGAuCGUCaUCGGc -3'
miRNA:   3'- -CAUGUcCUugGGCUGCUcGCAG-AGCC- -5'
26293 5' -54.8 NC_005345.2 + 31686 0.66 0.7344
Target:  5'- -gACAGGcgcAGCCCGuuGGGCGUucacgCUCGa -3'
miRNA:   3'- caUGUCC---UUGGGCugCUCGCA-----GAGCc -5'
26293 5' -54.8 NC_005345.2 + 26217 0.66 0.7344
Target:  5'- --uCGGGAuCCUgaaccgcauGGCG-GCGUCUCGGu -3'
miRNA:   3'- cauGUCCUuGGG---------CUGCuCGCAGAGCC- -5'
26293 5' -54.8 NC_005345.2 + 25480 0.66 0.7344
Target:  5'- -cGCcGGAACUCGAcaacccCGAcuucuggcugcuGCGUCUCGGc -3'
miRNA:   3'- caUGuCCUUGGGCU------GCU------------CGCAGAGCC- -5'
26293 5' -54.8 NC_005345.2 + 28125 0.66 0.7344
Target:  5'- cGUGCcgAGGAACgcacccgggCCGGCGAacGCGUCgccCGGu -3'
miRNA:   3'- -CAUG--UCCUUG---------GGCUGCU--CGCAGa--GCC- -5'
26293 5' -54.8 NC_005345.2 + 23910 0.66 0.7344
Target:  5'- -cGCAcGAGCgCCGACGAGcCGUCgugCGu -3'
miRNA:   3'- caUGUcCUUG-GGCUGCUC-GCAGa--GCc -5'
26293 5' -54.8 NC_005345.2 + 35836 0.66 0.7344
Target:  5'- -gGCGaGGGCgCGGCGGGUGgCUCGGu -3'
miRNA:   3'- caUGUcCUUGgGCUGCUCGCaGAGCC- -5'
26293 5' -54.8 NC_005345.2 + 40903 0.66 0.723841
Target:  5'- -cGCucGAACCCGGCGAGUccugcgggucGUCUaccCGGa -3'
miRNA:   3'- caUGucCUUGGGCUGCUCG----------CAGA---GCC- -5'
26293 5' -54.8 NC_005345.2 + 23171 0.66 0.723841
Target:  5'- -gACAGGAucaCCGAC--GCG-CUCGGg -3'
miRNA:   3'- caUGUCCUug-GGCUGcuCGCaGAGCC- -5'
26293 5' -54.8 NC_005345.2 + 18878 0.66 0.713191
Target:  5'- cUGCucGGGCUCGACGAGCccggccugCUCGGc -3'
miRNA:   3'- cAUGucCUUGGGCUGCUCGca------GAGCC- -5'
26293 5' -54.8 NC_005345.2 + 39596 0.66 0.713191
Target:  5'- -cGCGGGGACUaCGAgGGGCaG-CUCGGc -3'
miRNA:   3'- caUGUCCUUGG-GCUgCUCG-CaGAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.