miRNA display CGI


Results 1 - 20 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26294 3' -64.8 NC_005345.2 + 46071 0.66 0.283752
Target:  5'- aUCaggCGGcCGGGgCCGCCGggGCCuGCGCg -3'
miRNA:   3'- -AGa--GCC-GCUCgGGCGGCggCGG-UGCG- -5'
26294 3' -64.8 NC_005345.2 + 37891 0.66 0.283752
Target:  5'- gUCgCGGCGGuGCCCGUCaCgGCCggagucgagucaGCGCg -3'
miRNA:   3'- -AGaGCCGCU-CGGGCGGcGgCGG------------UGCG- -5'
26294 3' -64.8 NC_005345.2 + 15478 0.66 0.283752
Target:  5'- cUUCGGguCGAGCCCGagcugCGCCGCaaguCGgGCg -3'
miRNA:   3'- aGAGCC--GCUCGGGCg----GCGGCG----GUgCG- -5'
26294 3' -64.8 NC_005345.2 + 17382 0.66 0.283752
Target:  5'- aCUCGGUGccGUCCGCgGUgGUC-CGCg -3'
miRNA:   3'- aGAGCCGCu-CGGGCGgCGgCGGuGCG- -5'
26294 3' -64.8 NC_005345.2 + 40441 0.66 0.283752
Target:  5'- --aCGGaCGAGUCgGCCacagccggGCCGCcCACGUc -3'
miRNA:   3'- agaGCC-GCUCGGgCGG--------CGGCG-GUGCG- -5'
26294 3' -64.8 NC_005345.2 + 9176 0.66 0.283752
Target:  5'- aCUCGGCGAGCguggcgaggaauCgCGCUGuuGCCGg-- -3'
miRNA:   3'- aGAGCCGCUCG------------G-GCGGCggCGGUgcg -5'
26294 3' -64.8 NC_005345.2 + 6104 0.66 0.283752
Target:  5'- -aUCGaCGAGCCgcgcguaggUGCgGCCGCCgacgACGCa -3'
miRNA:   3'- agAGCcGCUCGG---------GCGgCGGCGG----UGCG- -5'
26294 3' -64.8 NC_005345.2 + 43926 0.66 0.283752
Target:  5'- -gUCGGCGAucagGCCgGCCGCgaGCUGCcCg -3'
miRNA:   3'- agAGCCGCU----CGGgCGGCGg-CGGUGcG- -5'
26294 3' -64.8 NC_005345.2 + 15432 0.66 0.283752
Target:  5'- cCUUGGCGuacaccucGCCCGCgacggccccgaGCCGCUuCGCc -3'
miRNA:   3'- aGAGCCGCu-------CGGGCGg----------CGGCGGuGCG- -5'
26294 3' -64.8 NC_005345.2 + 36785 0.66 0.283752
Target:  5'- -gUCGGCGA-UCgGCacaGCCGCaGCGCa -3'
miRNA:   3'- agAGCCGCUcGGgCGg--CGGCGgUGCG- -5'
26294 3' -64.8 NC_005345.2 + 4768 0.66 0.283079
Target:  5'- gUCaUGGUGGGCCCguGCCuuuccggGCuCGCCGCGg -3'
miRNA:   3'- -AGaGCCGCUCGGG--CGG-------CG-GCGGUGCg -5'
26294 3' -64.8 NC_005345.2 + 93 0.66 0.277079
Target:  5'- gUCUCaGUGAGCCUGUCGCCauagggGCUucaccUGCa -3'
miRNA:   3'- -AGAGcCGCUCGGGCGGCGG------CGGu----GCG- -5'
26294 3' -64.8 NC_005345.2 + 26782 0.66 0.277079
Target:  5'- --gCGGCGGaucguGgCCGgCGCCGCguCGCa -3'
miRNA:   3'- agaGCCGCU-----CgGGCgGCGGCGguGCG- -5'
26294 3' -64.8 NC_005345.2 + 12488 0.66 0.277079
Target:  5'- aUCUCGcG-GAGCUCGCCgagugGUCGCagUACGCg -3'
miRNA:   3'- -AGAGC-CgCUCGGGCGG-----CGGCG--GUGCG- -5'
26294 3' -64.8 NC_005345.2 + 26908 0.66 0.277079
Target:  5'- ---aGGCGGcGCUCGCCGaCCGguacgaCGCGCu -3'
miRNA:   3'- agagCCGCU-CGGGCGGC-GGCg-----GUGCG- -5'
26294 3' -64.8 NC_005345.2 + 2783 0.66 0.277079
Target:  5'- cCUCGGUacGGCuuGUCGgCGCCgGCGUg -3'
miRNA:   3'- aGAGCCGc-UCGggCGGCgGCGG-UGCG- -5'
26294 3' -64.8 NC_005345.2 + 17872 0.66 0.277079
Target:  5'- cCUCGGgGuccGCCguggcguaguCGCCGaucacggCGCCGCGCa -3'
miRNA:   3'- aGAGCCgCu--CGG----------GCGGCg------GCGGUGCG- -5'
26294 3' -64.8 NC_005345.2 + 36924 0.66 0.277079
Target:  5'- cUCgCGGUcaGAGUCCgGCCGaCCGCgGCGa -3'
miRNA:   3'- -AGaGCCG--CUCGGG-CGGC-GGCGgUGCg -5'
26294 3' -64.8 NC_005345.2 + 10004 0.66 0.277079
Target:  5'- --gCGaaGAGCCuCGCCGCgGCCgauuucaacuGCGCa -3'
miRNA:   3'- agaGCcgCUCGG-GCGGCGgCGG----------UGCG- -5'
26294 3' -64.8 NC_005345.2 + 21602 0.66 0.276419
Target:  5'- gUC-CGaCGAGCCgaUGCCGCgggugauCGCCGCGUg -3'
miRNA:   3'- -AGaGCcGCUCGG--GCGGCG-------GCGGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.