miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26294 5' -51.3 NC_005345.2 + 19100 0.66 0.918086
Target:  5'- --cCGUcGGUGUCGUCGGCccacgCGugGg -3'
miRNA:   3'- cuuGCA-CUACAGCAGCUGca---GCugCa -5'
26294 5' -51.3 NC_005345.2 + 32996 0.66 0.911689
Target:  5'- aGGCGgccggGGUGgCGggGGCGUCGACGa -3'
miRNA:   3'- cUUGCa----CUACaGCagCUGCAGCUGCa -5'
26294 5' -51.3 NC_005345.2 + 40154 0.66 0.911034
Target:  5'- --cCGUGcUGcCGUCGGgcaggcacacgccCGUCGACGUg -3'
miRNA:   3'- cuuGCACuACaGCAGCU-------------GCAGCUGCA- -5'
26294 5' -51.3 NC_005345.2 + 19476 0.66 0.905007
Target:  5'- cGGCGUGAUccgCGUgGAcacgcCGUCGACGg -3'
miRNA:   3'- cUUGCACUAca-GCAgCU-----GCAGCUGCa -5'
26294 5' -51.3 NC_005345.2 + 37678 0.66 0.890802
Target:  5'- -cGCGgcccUGAUGUCGUCGGcCGUgGGCc- -3'
miRNA:   3'- cuUGC----ACUACAGCAGCU-GCAgCUGca -5'
26294 5' -51.3 NC_005345.2 + 8693 0.66 0.890802
Target:  5'- -cACGgguUGUCGcCGAUGUCGAaCGUg -3'
miRNA:   3'- cuUGCacuACAGCaGCUGCAGCU-GCA- -5'
26294 5' -51.3 NC_005345.2 + 18681 0.66 0.890802
Target:  5'- aGAGgGUGccGUCGUCGucuuccugaucGCGgUCGGCGUc -3'
miRNA:   3'- -CUUgCACuaCAGCAGC-----------UGC-AGCUGCA- -5'
26294 5' -51.3 NC_005345.2 + 34637 0.67 0.883287
Target:  5'- gGGGCGUGGcugcUGcCGcUCGGCGUCG-CGg -3'
miRNA:   3'- -CUUGCACU----ACaGC-AGCUGCAGCuGCa -5'
26294 5' -51.3 NC_005345.2 + 7518 0.67 0.883287
Target:  5'- uGGGCGUGcUGcCGgCGGCGgUCGugGUg -3'
miRNA:   3'- -CUUGCACuACaGCaGCUGC-AGCugCA- -5'
26294 5' -51.3 NC_005345.2 + 35675 0.67 0.875504
Target:  5'- cGACGcGGUGcCGUCGGgccacagcacgcCGUCGGCGa -3'
miRNA:   3'- cUUGCaCUACaGCAGCU------------GCAGCUGCa -5'
26294 5' -51.3 NC_005345.2 + 35234 0.67 0.867459
Target:  5'- uGGGCGgcUGGUaGUCGUCGAUGggCGGCa- -3'
miRNA:   3'- -CUUGC--ACUA-CAGCAGCUGCa-GCUGca -5'
26294 5' -51.3 NC_005345.2 + 40058 0.67 0.867459
Target:  5'- cGACGUGcgggcgGUCGcCGGCGaCGGCGg -3'
miRNA:   3'- cUUGCACua----CAGCaGCUGCaGCUGCa -5'
26294 5' -51.3 NC_005345.2 + 745 0.67 0.859159
Target:  5'- uGAgGUGGUGggCGUCcAgGUCGACGUu -3'
miRNA:   3'- cUUgCACUACa-GCAGcUgCAGCUGCA- -5'
26294 5' -51.3 NC_005345.2 + 36754 0.67 0.859159
Target:  5'- cGGCGUucacGAaGUCGUUGACcggGUCGGCGUc -3'
miRNA:   3'- cUUGCA----CUaCAGCAGCUG---CAGCUGCA- -5'
26294 5' -51.3 NC_005345.2 + 38809 0.67 0.850613
Target:  5'- uGAcCGUcacGUCGUCGACGgCGACGa -3'
miRNA:   3'- -CUuGCAcuaCAGCAGCUGCaGCUGCa -5'
26294 5' -51.3 NC_005345.2 + 44998 0.68 0.841829
Target:  5'- cGACG-GAUGauucagacgaUCGcguUCGACGUCGGCGa -3'
miRNA:   3'- cUUGCaCUAC----------AGC---AGCUGCAGCUGCa -5'
26294 5' -51.3 NC_005345.2 + 3288 0.68 0.841829
Target:  5'- -uGCGUGccguccacGUCGagGGCGUCGGCGa -3'
miRNA:   3'- cuUGCACua------CAGCagCUGCAGCUGCa -5'
26294 5' -51.3 NC_005345.2 + 27932 0.68 0.841829
Target:  5'- cGAGCGcGGUGcC-UCGAgGUCGGCGg -3'
miRNA:   3'- -CUUGCaCUACaGcAGCUgCAGCUGCa -5'
26294 5' -51.3 NC_005345.2 + 3846 0.68 0.832816
Target:  5'- cGGCGUGcgGaccCGgcugaUCGGCGUCGGCGUc -3'
miRNA:   3'- cUUGCACuaCa--GC-----AGCUGCAGCUGCA- -5'
26294 5' -51.3 NC_005345.2 + 20896 0.68 0.823583
Target:  5'- -cGCGUc--GUCGUCGAccucgccgucguCGUCGACGUa -3'
miRNA:   3'- cuUGCAcuaCAGCAGCU------------GCAGCUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.