miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26295 3' -53.7 NC_005345.2 + 34089 0.66 0.7678
Target:  5'- -----cGCUGCa-GGCCGGCGCCcgCg -3'
miRNA:   3'- acaaguCGACGagCUGGCUGUGGuaG- -5'
26295 3' -53.7 NC_005345.2 + 5607 0.66 0.7678
Target:  5'- cGUggGGCgccggGCUCGugGCCGACGCgGUg -3'
miRNA:   3'- aCAagUCGa----CGAGC--UGGCUGUGgUAg -5'
26295 3' -53.7 NC_005345.2 + 16226 0.66 0.7678
Target:  5'- ---gCAGCUGCgcuaaccccugaUCGACCGGC-CCGc- -3'
miRNA:   3'- acaaGUCGACG------------AGCUGGCUGuGGUag -5'
26295 3' -53.7 NC_005345.2 + 2775 0.66 0.7678
Target:  5'- cGU--GGCUGCUCG-CCGcCGCCcuUCg -3'
miRNA:   3'- aCAagUCGACGAGCuGGCuGUGGu-AG- -5'
26295 3' -53.7 NC_005345.2 + 11395 0.66 0.7678
Target:  5'- cGggCgAGCaGCUCGACCucgacGACGCCGa- -3'
miRNA:   3'- aCaaG-UCGaCGAGCUGG-----CUGUGGUag -5'
26295 3' -53.7 NC_005345.2 + 39833 0.66 0.7678
Target:  5'- --cUCGGCaucgcggGCUCGGCCGgccGCACCuggCa -3'
miRNA:   3'- acaAGUCGa------CGAGCUGGC---UGUGGua-G- -5'
26295 3' -53.7 NC_005345.2 + 45439 0.66 0.757307
Target:  5'- --aUCAGCUGCaccUCGccGCCGGCgGCCGa- -3'
miRNA:   3'- acaAGUCGACG---AGC--UGGCUG-UGGUag -5'
26295 3' -53.7 NC_005345.2 + 3884 0.66 0.757307
Target:  5'- -----cGCUGCUCuccGCCGACGCUcgCa -3'
miRNA:   3'- acaaguCGACGAGc--UGGCUGUGGuaG- -5'
26295 3' -53.7 NC_005345.2 + 15647 0.66 0.757307
Target:  5'- ---cCGGaCUGCUCGccgaucuccgcGCCGaccuGCACCGUCg -3'
miRNA:   3'- acaaGUC-GACGAGC-----------UGGC----UGUGGUAG- -5'
26295 3' -53.7 NC_005345.2 + 10043 0.66 0.74668
Target:  5'- ----gGGCUGCUCG-CCGAggaCGCgAUCg -3'
miRNA:   3'- acaagUCGACGAGCuGGCU---GUGgUAG- -5'
26295 3' -53.7 NC_005345.2 + 40543 0.66 0.74668
Target:  5'- cGUUCgugaucgccgAGCUGCcCGACCugcucacuguGACGCCcgCa -3'
miRNA:   3'- aCAAG----------UCGACGaGCUGG----------CUGUGGuaG- -5'
26295 3' -53.7 NC_005345.2 + 43978 0.66 0.74668
Target:  5'- ---cCGGCgGCUCGcCCGAC-UCGUCg -3'
miRNA:   3'- acaaGUCGaCGAGCuGGCUGuGGUAG- -5'
26295 3' -53.7 NC_005345.2 + 27038 0.66 0.74668
Target:  5'- aGUcUguGCUGCUCGccACCGAgcCGCCGa- -3'
miRNA:   3'- aCA-AguCGACGAGC--UGGCU--GUGGUag -5'
26295 3' -53.7 NC_005345.2 + 27514 0.66 0.740244
Target:  5'- cGagCAGCUGCUC-ACCGAggcgcacgcggcgauCACCcgCg -3'
miRNA:   3'- aCaaGUCGACGAGcUGGCU---------------GUGGuaG- -5'
26295 3' -53.7 NC_005345.2 + 29768 0.66 0.73593
Target:  5'- -----cGCUGCUCGGCaCGAcCGCCGa- -3'
miRNA:   3'- acaaguCGACGAGCUG-GCU-GUGGUag -5'
26295 3' -53.7 NC_005345.2 + 14404 0.66 0.73593
Target:  5'- ---cCGGCUGCacgUCG-CCGACGCCu-- -3'
miRNA:   3'- acaaGUCGACG---AGCuGGCUGUGGuag -5'
26295 3' -53.7 NC_005345.2 + 29382 0.66 0.725069
Target:  5'- --cUCGGUgucguacgGCUCGGCCGcCGCC-UCg -3'
miRNA:   3'- acaAGUCGa-------CGAGCUGGCuGUGGuAG- -5'
26295 3' -53.7 NC_005345.2 + 40178 0.66 0.725069
Target:  5'- cGcgCAGCUGCg-GAUCGAgGCCGg- -3'
miRNA:   3'- aCaaGUCGACGagCUGGCUgUGGUag -5'
26295 3' -53.7 NC_005345.2 + 1271 0.66 0.725069
Target:  5'- ---aCAGCacGC-CGGCCGACgucACCGUCg -3'
miRNA:   3'- acaaGUCGa-CGaGCUGGCUG---UGGUAG- -5'
26295 3' -53.7 NC_005345.2 + 24496 0.67 0.703068
Target:  5'- cGUg-AGCcGCUCGAUCGGCgACCAa- -3'
miRNA:   3'- aCAagUCGaCGAGCUGGCUG-UGGUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.