miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26296 3' -55.4 NC_005345.2 + 45362 0.66 0.704693
Target:  5'- cCGUCGACgugaucgccacgUCcgGCGAGUgggggugugccaaGCCcacGCGCg -3'
miRNA:   3'- aGCAGCUG------------AGuaCGCUCG-------------UGGa--CGCG- -5'
26296 3' -55.4 NC_005345.2 + 20902 0.66 0.694921
Target:  5'- gUCGUCGACcucgccgucgUCGU-CGAcGUACCgGUGCa -3'
miRNA:   3'- -AGCAGCUG----------AGUAcGCU-CGUGGaCGCG- -5'
26296 3' -55.4 NC_005345.2 + 22861 0.66 0.694921
Target:  5'- gUGUCGACgaCGaGCGGGCGCCguuCGUc -3'
miRNA:   3'- aGCAGCUGa-GUaCGCUCGUGGac-GCG- -5'
26296 3' -55.4 NC_005345.2 + 32355 0.66 0.694921
Target:  5'- -gGUCGAgUCGguugGCGAGguCACCcugucggacagUGCGCu -3'
miRNA:   3'- agCAGCUgAGUa---CGCUC--GUGG-----------ACGCG- -5'
26296 3' -55.4 NC_005345.2 + 16731 0.66 0.694921
Target:  5'- cCGUaCGGCUCAcccgGUG-GCugCUGuCGCc -3'
miRNA:   3'- aGCA-GCUGAGUa---CGCuCGugGAC-GCG- -5'
26296 3' -55.4 NC_005345.2 + 29030 0.66 0.694921
Target:  5'- aCGUCGACgacaucaCGUuCGAGUuUCUGCGUg -3'
miRNA:   3'- aGCAGCUGa------GUAcGCUCGuGGACGCG- -5'
26296 3' -55.4 NC_005345.2 + 43539 0.66 0.694921
Target:  5'- gCGUCGGC-CA--CGAGC-CCgGCGCc -3'
miRNA:   3'- aGCAGCUGaGUacGCUCGuGGaCGCG- -5'
26296 3' -55.4 NC_005345.2 + 22133 0.66 0.685099
Target:  5'- cUCGUCGACguggucgcgcuaccgCGacgcugugGCGAGCagcGCCgGCGCu -3'
miRNA:   3'- -AGCAGCUGa--------------GUa-------CGCUCG---UGGaCGCG- -5'
26296 3' -55.4 NC_005345.2 + 29138 0.66 0.684005
Target:  5'- -gGUCGuCUCGUGCccggcAGCccGCCUGuCGCc -3'
miRNA:   3'- agCAGCuGAGUACGc----UCG--UGGAC-GCG- -5'
26296 3' -55.4 NC_005345.2 + 10077 0.66 0.684005
Target:  5'- cCGUCGaggcGCUCGUcauccgggccgaGCG-GCACaUGCGCg -3'
miRNA:   3'- aGCAGC----UGAGUA------------CGCuCGUGgACGCG- -5'
26296 3' -55.4 NC_005345.2 + 28542 0.66 0.684005
Target:  5'- gUCGcCGAgaCuUGCGAGCGCCcGCcgGCc -3'
miRNA:   3'- -AGCaGCUgaGuACGCUCGUGGaCG--CG- -5'
26296 3' -55.4 NC_005345.2 + 2034 0.66 0.673039
Target:  5'- cUCGUCGA-----GCGGGC-CCgGCGCg -3'
miRNA:   3'- -AGCAGCUgaguaCGCUCGuGGaCGCG- -5'
26296 3' -55.4 NC_005345.2 + 24613 0.66 0.673039
Target:  5'- cUCGUCGGa-CAUGUcggugucgccGGGCGCCU-CGCg -3'
miRNA:   3'- -AGCAGCUgaGUACG----------CUCGUGGAcGCG- -5'
26296 3' -55.4 NC_005345.2 + 30246 0.66 0.673039
Target:  5'- -gGUCGACgacgGUGCGgguccGGCcggucacaggacACCUGCGCu -3'
miRNA:   3'- agCAGCUGag--UACGC-----UCG------------UGGACGCG- -5'
26296 3' -55.4 NC_005345.2 + 43985 0.66 0.673039
Target:  5'- cUCGccCGACUCGU-CGGcCGCCgcgGCGCg -3'
miRNA:   3'- -AGCa-GCUGAGUAcGCUcGUGGa--CGCG- -5'
26296 3' -55.4 NC_005345.2 + 40359 0.66 0.669741
Target:  5'- -gGUaCGGC-CGUGgGGGCGaucaccgcgcucauCCUGCGCa -3'
miRNA:   3'- agCA-GCUGaGUACgCUCGU--------------GGACGCG- -5'
26296 3' -55.4 NC_005345.2 + 26916 0.66 0.662034
Target:  5'- cUCGcCGAC-CGguacgacgcgcUGuCGGGUugCUGCGCg -3'
miRNA:   3'- -AGCaGCUGaGU-----------AC-GCUCGugGACGCG- -5'
26296 3' -55.4 NC_005345.2 + 40078 0.66 0.662034
Target:  5'- cCGUCGACc---GCGGGCAgCaaugGCGCc -3'
miRNA:   3'- aGCAGCUGaguaCGCUCGUgGa---CGCG- -5'
26296 3' -55.4 NC_005345.2 + 15939 0.66 0.662034
Target:  5'- cCGccugCGACacCGUGCuGAGCACgCUGcCGCg -3'
miRNA:   3'- aGCa---GCUGa-GUACG-CUCGUG-GAC-GCG- -5'
26296 3' -55.4 NC_005345.2 + 44931 0.66 0.662034
Target:  5'- --aUCGGCUCG-GCGuaccgcAGCAUCUGcCGCg -3'
miRNA:   3'- agcAGCUGAGUaCGC------UCGUGGAC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.