miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26296 5' -61.3 NC_005345.2 + 46247 0.66 0.421402
Target:  5'- -gGCGCgaauccgguGGGGCgGaGGAUGUCGGCGcGUu -3'
miRNA:   3'- agCGCG---------UCCUGgC-CCUACGGCUGC-CG- -5'
26296 5' -61.3 NC_005345.2 + 39052 0.66 0.421402
Target:  5'- gUCGCGCAugugccgcucGGCCcGGAUGacgagcgccUCGACGGCg -3'
miRNA:   3'- -AGCGCGUc---------CUGGcCCUAC---------GGCUGCCG- -5'
26296 5' -61.3 NC_005345.2 + 10645 0.66 0.421401
Target:  5'- aCGCGUgacucaGGGACCGcGGAccgGUgGggcGCGGCg -3'
miRNA:   3'- aGCGCG------UCCUGGC-CCUa--CGgC---UGCCG- -5'
26296 5' -61.3 NC_005345.2 + 43864 0.66 0.412364
Target:  5'- -gGCGUcGG-CCGGGAcuCCG-CGGCg -3'
miRNA:   3'- agCGCGuCCuGGCCCUacGGCuGCCG- -5'
26296 5' -61.3 NC_005345.2 + 22083 0.66 0.412364
Target:  5'- gCGCGCaAGGuuCCGuuGAcgGUCGGCGGCu -3'
miRNA:   3'- aGCGCG-UCCu-GGCc-CUa-CGGCUGCCG- -5'
26296 5' -61.3 NC_005345.2 + 2637 0.66 0.412364
Target:  5'- -gGCGCGGacuGACCGGGucaaaGCuCGcaGCGGCc -3'
miRNA:   3'- agCGCGUC---CUGGCCCua---CG-GC--UGCCG- -5'
26296 5' -61.3 NC_005345.2 + 22639 0.66 0.412364
Target:  5'- cUCGUGcCGGGugCaaGGGGucgaccUGCgGACGGUc -3'
miRNA:   3'- -AGCGC-GUCCugG--CCCU------ACGgCUGCCG- -5'
26296 5' -61.3 NC_005345.2 + 46542 0.66 0.412364
Target:  5'- aUCGCGCugcGGAUUGGcuUGCCG-UGGUc -3'
miRNA:   3'- -AGCGCGu--CCUGGCCcuACGGCuGCCG- -5'
26296 5' -61.3 NC_005345.2 + 9607 0.66 0.412364
Target:  5'- -gGcCGCGGGGCCGGugcacGAccUGCuCGAuCGGCc -3'
miRNA:   3'- agC-GCGUCCUGGCC-----CU--ACG-GCU-GCCG- -5'
26296 5' -61.3 NC_005345.2 + 14569 0.66 0.412364
Target:  5'- aCGCGUccGACaCGGcGGacagUGCgGGCGGCa -3'
miRNA:   3'- aGCGCGucCUG-GCC-CU----ACGgCUGCCG- -5'
26296 5' -61.3 NC_005345.2 + 26637 0.66 0.412364
Target:  5'- -gGCGCccGGCCGGGcgacccGUGUCGG-GGCg -3'
miRNA:   3'- agCGCGucCUGGCCC------UACGGCUgCCG- -5'
26296 5' -61.3 NC_005345.2 + 33273 0.66 0.403448
Target:  5'- gUGCcCGGGuccaugUCGaGGAUGCgGGCGGCg -3'
miRNA:   3'- aGCGcGUCCu-----GGC-CCUACGgCUGCCG- -5'
26296 5' -61.3 NC_005345.2 + 45670 0.66 0.403448
Target:  5'- cUCGCGCGGGuaacgUCGaGGcAUGuCCGACaGCc -3'
miRNA:   3'- -AGCGCGUCCu----GGC-CC-UAC-GGCUGcCG- -5'
26296 5' -61.3 NC_005345.2 + 27337 0.66 0.403448
Target:  5'- gUCGCGUggcGGGGCgCGGuacuuccGCCGuCGGCu -3'
miRNA:   3'- -AGCGCG---UCCUG-GCCcua----CGGCuGCCG- -5'
26296 5' -61.3 NC_005345.2 + 22339 0.66 0.403448
Target:  5'- aCGUGUgGGGGCgCGGGucgcUGCCGcACGGg -3'
miRNA:   3'- aGCGCG-UCCUG-GCCCu---ACGGC-UGCCg -5'
26296 5' -61.3 NC_005345.2 + 18418 0.66 0.403448
Target:  5'- cUCGCGCucacGGCCGuGAUuCUGugGGCg -3'
miRNA:   3'- -AGCGCGuc--CUGGCcCUAcGGCugCCG- -5'
26296 5' -61.3 NC_005345.2 + 15806 0.66 0.403448
Target:  5'- cUCGCGCcGcucUCGGcGAcuccgGCCGACGGCc -3'
miRNA:   3'- -AGCGCGuCcu-GGCC-CUa----CGGCUGCCG- -5'
26296 5' -61.3 NC_005345.2 + 32779 0.66 0.403448
Target:  5'- -gGCGCA-GAgCGGcGAcGCCG-CGGCg -3'
miRNA:   3'- agCGCGUcCUgGCC-CUaCGGCuGCCG- -5'
26296 5' -61.3 NC_005345.2 + 33025 0.66 0.403448
Target:  5'- aUCGgGCucGGCCgcGGGGUGCgGucCGGCu -3'
miRNA:   3'- -AGCgCGucCUGG--CCCUACGgCu-GCCG- -5'
26296 5' -61.3 NC_005345.2 + 45539 0.66 0.403448
Target:  5'- -gGCGCGGG-CCGuGGGgucaccuguggGCCGACGacccGCa -3'
miRNA:   3'- agCGCGUCCuGGC-CCUa----------CGGCUGC----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.