miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26297 3' -54.8 NC_005345.2 + 3493 0.66 0.755201
Target:  5'- aCCCGCGCGaggcucgugGGGAuGUCGGUUc-GUCa -3'
miRNA:   3'- gGGGUGCGCa--------UCUU-CAGCCAGcuCAG- -5'
26297 3' -54.8 NC_005345.2 + 28575 0.66 0.755201
Target:  5'- aCCgACGCGacGGAGUCGGUCa---- -3'
miRNA:   3'- gGGgUGCGCauCUUCAGCCAGcucag -5'
26297 3' -54.8 NC_005345.2 + 19115 0.66 0.743817
Target:  5'- gCCCACGCGUGGGcgccgauccgcucGGcgaccUCGGcCGGGa- -3'
miRNA:   3'- gGGGUGCGCAUCU-------------UC-----AGCCaGCUCag -5'
26297 3' -54.8 NC_005345.2 + 29566 0.66 0.7344
Target:  5'- gCCCCGuccggcacUGCGccGAugguGUCGGUCGAG-Ca -3'
miRNA:   3'- -GGGGU--------GCGCauCUu---CAGCCAGCUCaG- -5'
26297 3' -54.8 NC_005345.2 + 43342 0.67 0.691663
Target:  5'- -gCUGCGCGUAcggcucgaccucGggGUCGGcCGGGUa -3'
miRNA:   3'- ggGGUGCGCAU------------CuuCAGCCaGCUCAg -5'
26297 3' -54.8 NC_005345.2 + 16906 0.67 0.691663
Target:  5'- aCCgUGCGCGUGGugacccCGGUCGcGGUCa -3'
miRNA:   3'- -GGgGUGCGCAUCuuca--GCCAGC-UCAG- -5'
26297 3' -54.8 NC_005345.2 + 40897 0.67 0.691663
Target:  5'- aCCCCGCGCuc-GAAccCGG-CGAGUCc -3'
miRNA:   3'- -GGGGUGCGcauCUUcaGCCaGCUCAG- -5'
26297 3' -54.8 NC_005345.2 + 3296 0.67 0.669907
Target:  5'- gUCCACGuCGaGGgcGUCGG-CGAGUg -3'
miRNA:   3'- gGGGUGC-GCaUCuuCAGCCaGCUCAg -5'
26297 3' -54.8 NC_005345.2 + 12380 0.67 0.669907
Target:  5'- gCCUCGCaGCGgaggGGAAGgcagCGGcgaggcgCGAGUCg -3'
miRNA:   3'- -GGGGUG-CGCa---UCUUCa---GCCa------GCUCAG- -5'
26297 3' -54.8 NC_005345.2 + 10393 0.67 0.658971
Target:  5'- gCCCCACgGCGU--GAGcCGGgcgaGGGUCg -3'
miRNA:   3'- -GGGGUG-CGCAucUUCaGCCag--CUCAG- -5'
26297 3' -54.8 NC_005345.2 + 17168 0.68 0.596461
Target:  5'- gCCgACgggggcgGCGUAGAAGUCGGcgccuucccacagccUCGGGUUg -3'
miRNA:   3'- gGGgUG-------CGCAUCUUCAGCC---------------AGCUCAG- -5'
26297 3' -54.8 NC_005345.2 + 46982 0.69 0.549849
Target:  5'- aCCCgccacggucaACGCGUGGAAGcUCGGcaagCGAGg- -3'
miRNA:   3'- gGGG----------UGCGCAUCUUC-AGCCa---GCUCag -5'
26297 3' -54.8 NC_005345.2 + 29863 0.77 0.214841
Target:  5'- uCCCCuuCGCGUGGAGGUgGG-CGAGg- -3'
miRNA:   3'- -GGGGu-GCGCAUCUUCAgCCaGCUCag -5'
26297 3' -54.8 NC_005345.2 + 17045 1.1 0.000938
Target:  5'- gCCCCACGCGUAGAAGUCGGUCGAGUCc -3'
miRNA:   3'- -GGGGUGCGCAUCUUCAGCCAGCUCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.