miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26297 5' -59.2 NC_005345.2 + 5274 0.66 0.52529
Target:  5'- cGGGACgCGCUC-CGCCGcggagUCC-CGGcCg -3'
miRNA:   3'- -CCCUGaGCGAGcGUGGC-----AGGaGCCuG- -5'
26297 5' -59.2 NC_005345.2 + 12194 0.66 0.522207
Target:  5'- aGGGACUCGacgacgagcgaggaCUCGcCGCgGUCggcCGGACu -3'
miRNA:   3'- -CCCUGAGC--------------GAGC-GUGgCAGga-GCCUG- -5'
26297 5' -59.2 NC_005345.2 + 16827 0.66 0.51402
Target:  5'- cGGGAUcacacggCGCUucuucacCGCGCCGUCCcgcaguucgaGGACg -3'
miRNA:   3'- -CCCUGa------GCGA-------GCGUGGCAGGag--------CCUG- -5'
26297 5' -59.2 NC_005345.2 + 41585 0.66 0.50893
Target:  5'- cGGGcguGCUCGgUCGUgauGCCGUgcacggccgucgcacCCUCGGGg -3'
miRNA:   3'- -CCC---UGAGCgAGCG---UGGCA---------------GGAGCCUg -5'
26297 5' -59.2 NC_005345.2 + 26277 0.66 0.504873
Target:  5'- aGGGGCacaaguUCGCgaagCGCACCGaCC-CGG-Cg -3'
miRNA:   3'- -CCCUG------AGCGa---GCGUGGCaGGaGCCuG- -5'
26297 5' -59.2 NC_005345.2 + 4606 0.66 0.504873
Target:  5'- cGGACcCGCUCGCGgCGUaCCU-GGuCg -3'
miRNA:   3'- cCCUGaGCGAGCGUgGCA-GGAgCCuG- -5'
26297 5' -59.2 NC_005345.2 + 29428 0.67 0.455444
Target:  5'- cGGGCgUUGCggGCGUCGUCCUCGG-Cg -3'
miRNA:   3'- cCCUG-AGCGagCGUGGCAGGAGCCuG- -5'
26297 5' -59.2 NC_005345.2 + 35651 0.67 0.443022
Target:  5'- cGGGuGCUCGC-CGCGCCaccgcaccgacgcgGUgCCgUCGGGCc -3'
miRNA:   3'- -CCC-UGAGCGaGCGUGG--------------CA-GG-AGCCUG- -5'
26297 5' -59.2 NC_005345.2 + 8573 0.67 0.436412
Target:  5'- gGGGAUUgagcCGCUCGacgugauCCGUgCCUCGGuCg -3'
miRNA:   3'- -CCCUGA----GCGAGCgu-----GGCA-GGAGCCuG- -5'
26297 5' -59.2 NC_005345.2 + 43393 0.67 0.436412
Target:  5'- cGGAC-CGcCUCgGCGCaGUCCUCGGcuGCg -3'
miRNA:   3'- cCCUGaGC-GAG-CGUGgCAGGAGCC--UG- -5'
26297 5' -59.2 NC_005345.2 + 35944 0.67 0.436412
Target:  5'- gGGGuguGCUCGC-CGCGCgGgcugCCgcUCGGGCc -3'
miRNA:   3'- -CCC---UGAGCGaGCGUGgCa---GG--AGCCUG- -5'
26297 5' -59.2 NC_005345.2 + 44753 0.67 0.42707
Target:  5'- cGGGcCUugucgaucgCGCUCaugcgGCGCCGUCCuuccgcugcugcUCGGGCa -3'
miRNA:   3'- -CCCuGA---------GCGAG-----CGUGGCAGG------------AGCCUG- -5'
26297 5' -59.2 NC_005345.2 + 22435 0.67 0.417847
Target:  5'- cGGGGCggaCGUUCGgcgacaugccaCGCCG-CCUCGGGg -3'
miRNA:   3'- -CCCUGa--GCGAGC-----------GUGGCaGGAGCCUg -5'
26297 5' -59.2 NC_005345.2 + 31890 0.68 0.408746
Target:  5'- aGGAC-CGCggCGCcuGCCGcCCggUCGGACg -3'
miRNA:   3'- cCCUGaGCGa-GCG--UGGCaGG--AGCCUG- -5'
26297 5' -59.2 NC_005345.2 + 17373 0.68 0.408746
Target:  5'- cGGGCUCGUacUCgGUGCCGUCCgCGGu- -3'
miRNA:   3'- cCCUGAGCG--AG-CGUGGCAGGaGCCug -5'
26297 5' -59.2 NC_005345.2 + 47153 0.68 0.408746
Target:  5'- aGGGGg-CGCUgugaGCGCCG-CCUCGcGGCa -3'
miRNA:   3'- -CCCUgaGCGAg---CGUGGCaGGAGC-CUG- -5'
26297 5' -59.2 NC_005345.2 + 17706 0.68 0.408746
Target:  5'- cGGcGcCUCGCaccCGCGCUcaUCCUCGGGCu -3'
miRNA:   3'- -CC-CuGAGCGa--GCGUGGc-AGGAGCCUG- -5'
26297 5' -59.2 NC_005345.2 + 3940 0.68 0.39977
Target:  5'- aGGuGCUCGC-CGCgGCCGgcagccUCUCGGGCg -3'
miRNA:   3'- -CCcUGAGCGaGCG-UGGCa-----GGAGCCUG- -5'
26297 5' -59.2 NC_005345.2 + 12170 0.68 0.390922
Target:  5'- cGGGGCUCGC-CGC-----CCUCGGAUg -3'
miRNA:   3'- -CCCUGAGCGaGCGuggcaGGAGCCUG- -5'
26297 5' -59.2 NC_005345.2 + 19832 0.68 0.390922
Target:  5'- cGGuGACcggcacggUCGCguucacgagCGCGCUG-CCUCGGGCg -3'
miRNA:   3'- -CC-CUG--------AGCGa--------GCGUGGCaGGAGCCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.