miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26298 3' -53.5 NC_005345.2 + 25102 0.66 0.774758
Target:  5'- gGCGUucggGCCGCGGcUGCagGUgaagGUgACGCg -3'
miRNA:   3'- aCGCA----UGGCGUC-ACGaaCGa---CA-UGCG- -5'
26298 3' -53.5 NC_005345.2 + 31832 0.66 0.764348
Target:  5'- gUGCGUGcacCCGCGGcGggUGCg--GCGCa -3'
miRNA:   3'- -ACGCAU---GGCGUCaCgaACGacaUGCG- -5'
26298 3' -53.5 NC_005345.2 + 4619 0.66 0.753794
Target:  5'- gGCGUACC-UGGUcgaGC-UGCUGaACGCg -3'
miRNA:   3'- aCGCAUGGcGUCA---CGaACGACaUGCG- -5'
26298 3' -53.5 NC_005345.2 + 16991 0.66 0.752731
Target:  5'- cGUGacgacgaucUGCCGCuuGUGCUUGCUcuucgccGUGCGa -3'
miRNA:   3'- aCGC---------AUGGCGu-CACGAACGA-------CAUGCg -5'
26298 3' -53.5 NC_005345.2 + 30704 0.66 0.747398
Target:  5'- cUGCGggugGCCGCGGUGaucggcgaggaccUGCUGc-CGCa -3'
miRNA:   3'- -ACGCa---UGGCGUCACga-----------ACGACauGCG- -5'
26298 3' -53.5 NC_005345.2 + 25369 0.66 0.743109
Target:  5'- gGCGUG--GCAGUGCcgGCUcgACGCg -3'
miRNA:   3'- aCGCAUggCGUCACGaaCGAcaUGCG- -5'
26298 3' -53.5 NC_005345.2 + 41108 0.66 0.743109
Target:  5'- cGCGgGCCGCAGcacGCccGCgGUACGg -3'
miRNA:   3'- aCGCaUGGCGUCa--CGaaCGaCAUGCg -5'
26298 3' -53.5 NC_005345.2 + 5772 0.66 0.743109
Target:  5'- gGCGguCCGCAG-GUcgGC-GUACGCg -3'
miRNA:   3'- aCGCauGGCGUCaCGaaCGaCAUGCG- -5'
26298 3' -53.5 NC_005345.2 + 43917 0.66 0.732305
Target:  5'- cGUGUACCGCGG-GCaccccgacgGCgUGUAgCGCc -3'
miRNA:   3'- aCGCAUGGCGUCaCGaa-------CG-ACAU-GCG- -5'
26298 3' -53.5 NC_005345.2 + 20329 0.66 0.732305
Target:  5'- gGCGaugggcagGCgCGCGGUGCggaccUUGCcGUGCGUg -3'
miRNA:   3'- aCGCa-------UG-GCGUCACG-----AACGaCAUGCG- -5'
26298 3' -53.5 NC_005345.2 + 40817 0.67 0.71039
Target:  5'- gGCGUgcaccGCCGCcGgaacGC-UGCUGcUGCGCg -3'
miRNA:   3'- aCGCA-----UGGCGuCa---CGaACGAC-AUGCG- -5'
26298 3' -53.5 NC_005345.2 + 14916 0.67 0.71039
Target:  5'- aGCGgGCCGCGGcGCggcgGCUGca-GCg -3'
miRNA:   3'- aCGCaUGGCGUCaCGaa--CGACaugCG- -5'
26298 3' -53.5 NC_005345.2 + 37787 0.67 0.71039
Target:  5'- cGCG-ACCGgGGcUGC-UGCcGUugGCg -3'
miRNA:   3'- aCGCaUGGCgUC-ACGaACGaCAugCG- -5'
26298 3' -53.5 NC_005345.2 + 23954 0.67 0.688151
Target:  5'- gGUGauucACCGCGG-GC-UGCUGU-CGCg -3'
miRNA:   3'- aCGCa---UGGCGUCaCGaACGACAuGCG- -5'
26298 3' -53.5 NC_005345.2 + 12774 0.68 0.665683
Target:  5'- cGCG-GCCGCGGaGCgcGCccgcGUACGCg -3'
miRNA:   3'- aCGCaUGGCGUCaCGaaCGa---CAUGCG- -5'
26298 3' -53.5 NC_005345.2 + 2406 0.68 0.665683
Target:  5'- gGUGUGCUGgGGUGC-UGCa--GCGCg -3'
miRNA:   3'- aCGCAUGGCgUCACGaACGacaUGCG- -5'
26298 3' -53.5 NC_005345.2 + 33533 0.68 0.654393
Target:  5'- gGCGaGCCGCGGcaUGCUgacgacGCUcgGCGCa -3'
miRNA:   3'- aCGCaUGGCGUC--ACGAa-----CGAcaUGCG- -5'
26298 3' -53.5 NC_005345.2 + 29388 0.68 0.620439
Target:  5'- cGUG-GCCGCGGUGCUcugGUcgGUgcACGCg -3'
miRNA:   3'- aCGCaUGGCGUCACGAa--CGa-CA--UGCG- -5'
26298 3' -53.5 NC_005345.2 + 31183 0.68 0.609128
Target:  5'- gUGCGUACucgggCGCGGcGggUGCggcggGUGCGCa -3'
miRNA:   3'- -ACGCAUG-----GCGUCaCgaACGa----CAUGCG- -5'
26298 3' -53.5 NC_005345.2 + 4206 0.69 0.597839
Target:  5'- gGCGgcGCgGCAGaUGC-UGCgGUACGCc -3'
miRNA:   3'- aCGCa-UGgCGUC-ACGaACGaCAUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.