miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26298 5' -57.3 NC_005345.2 + 31465 0.66 0.561463
Target:  5'- cCGGC-GCGGUUcGUACggaucgagcggauCGGCGGCCc -3'
miRNA:   3'- -GCCGaCGUCGAaCAUGac-----------GCCGUCGG- -5'
26298 5' -57.3 NC_005345.2 + 40737 0.66 0.557112
Target:  5'- cCGG--GCAGCccuacGUACUGgGGCGGaCCg -3'
miRNA:   3'- -GCCgaCGUCGaa---CAUGACgCCGUC-GG- -5'
26298 5' -57.3 NC_005345.2 + 35873 0.66 0.557112
Target:  5'- cCGGCgaGCuGCcgGUGCaGCGGUucGCCg -3'
miRNA:   3'- -GCCGa-CGuCGaaCAUGaCGCCGu-CGG- -5'
26298 5' -57.3 NC_005345.2 + 4272 0.66 0.556026
Target:  5'- cCGGCggugcggGCAGCUcgGgcucggGCUGCGGUucgacccauccgaGGUCg -3'
miRNA:   3'- -GCCGa------CGUCGAa-Ca-----UGACGCCG-------------UCGG- -5'
26298 5' -57.3 NC_005345.2 + 11366 0.66 0.546278
Target:  5'- aCGGCaGCAGCcccgGU-C-GCGGCcGCCu -3'
miRNA:   3'- -GCCGaCGUCGaa--CAuGaCGCCGuCGG- -5'
26298 5' -57.3 NC_005345.2 + 37237 0.66 0.546278
Target:  5'- gCGGCgugccguaGUAGCggGcgACgGCGGCGGUCg -3'
miRNA:   3'- -GCCGa-------CGUCGaaCa-UGaCGCCGUCGG- -5'
26298 5' -57.3 NC_005345.2 + 32477 0.66 0.546278
Target:  5'- cCGGCUGaCAGCgUG-AC-GCG-CGGCCu -3'
miRNA:   3'- -GCCGAC-GUCGaACaUGaCGCcGUCGG- -5'
26298 5' -57.3 NC_005345.2 + 39017 0.66 0.535512
Target:  5'- gCGGCcGCcGCcUGUACcucggggaUGgGGCAGUCg -3'
miRNA:   3'- -GCCGaCGuCGaACAUG--------ACgCCGUCGG- -5'
26298 5' -57.3 NC_005345.2 + 5058 0.66 0.535512
Target:  5'- gGGCg--AGCcggUGUGCUGCGGUaaGGCg -3'
miRNA:   3'- gCCGacgUCGa--ACAUGACGCCG--UCGg -5'
26298 5' -57.3 NC_005345.2 + 18635 0.66 0.535512
Target:  5'- gCGGCaGCAcccucgcccGCggGUcGCUGUccGGCAGCCu -3'
miRNA:   3'- -GCCGaCGU---------CGaaCA-UGACG--CCGUCGG- -5'
26298 5' -57.3 NC_005345.2 + 41435 0.66 0.535512
Target:  5'- -aGCgGCAGCUcGUACcgGCGGCAcucGCg -3'
miRNA:   3'- gcCGaCGUCGAaCAUGa-CGCCGU---CGg -5'
26298 5' -57.3 NC_005345.2 + 36945 0.66 0.535512
Target:  5'- aGGCgGCGGCcgg-ACaGCGGCagacGGCCg -3'
miRNA:   3'- gCCGaCGUCGaacaUGaCGCCG----UCGG- -5'
26298 5' -57.3 NC_005345.2 + 37740 0.66 0.535512
Target:  5'- cCGGCUGguCGGCgucgucgagGUcgaGCUGCucgcccgcaGGCGGCCg -3'
miRNA:   3'- -GCCGAC--GUCGaa-------CA---UGACG---------CCGUCGG- -5'
26298 5' -57.3 NC_005345.2 + 10288 0.66 0.535512
Target:  5'- aGGagaUGCGGCgcggGCUGUGGgAGCg -3'
miRNA:   3'- gCCg--ACGUCGaacaUGACGCCgUCGg -5'
26298 5' -57.3 NC_005345.2 + 6793 0.66 0.523756
Target:  5'- gCGGCUGgAGUcgcacagUUGguaUGCGGCGgacGCCa -3'
miRNA:   3'- -GCCGACgUCG-------AACaugACGCCGU---CGG- -5'
26298 5' -57.3 NC_005345.2 + 31266 0.66 0.514212
Target:  5'- uCGGgUGC-GCggGUGCggggGCGGguGCg -3'
miRNA:   3'- -GCCgACGuCGaaCAUGa---CGCCguCGg -5'
26298 5' -57.3 NC_005345.2 + 15370 0.67 0.503692
Target:  5'- gCGGCgacgGCAGCgcggggGUACUuggccCGGguGCUg -3'
miRNA:   3'- -GCCGa---CGUCGaa----CAUGAc----GCCguCGG- -5'
26298 5' -57.3 NC_005345.2 + 18794 0.67 0.503692
Target:  5'- gGGCUGCcgucgGGCaggGUGacgGCGGCgcgGGCCu -3'
miRNA:   3'- gCCGACG-----UCGaa-CAUga-CGCCG---UCGG- -5'
26298 5' -57.3 NC_005345.2 + 31182 0.67 0.503692
Target:  5'- aGGCcGCGGCccg-GCagGCGGCcgAGCCg -3'
miRNA:   3'- gCCGaCGUCGaacaUGa-CGCCG--UCGG- -5'
26298 5' -57.3 NC_005345.2 + 32895 0.67 0.493267
Target:  5'- aGGCguaCAGCaaGcACUGCGGUacgcAGCCg -3'
miRNA:   3'- gCCGac-GUCGaaCaUGACGCCG----UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.