miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26298 5' -57.3 NC_005345.2 + 16285 1.11 0.000343
Target:  5'- gCGGCUGCAGCUUGUACUGCGGCAGCCc -3'
miRNA:   3'- -GCCGACGUCGAACAUGACGCCGUCGG- -5'
26298 5' -57.3 NC_005345.2 + 47010 0.77 0.108583
Target:  5'- cCGGCUGCAcggcgaggccuGCUUucACUGCGGC-GCCg -3'
miRNA:   3'- -GCCGACGU-----------CGAAcaUGACGCCGuCGG- -5'
26298 5' -57.3 NC_005345.2 + 18764 0.77 0.114923
Target:  5'- uGGCcgGCGGCgUGUACUGCGGagcaAGUCu -3'
miRNA:   3'- gCCGa-CGUCGaACAUGACGCCg---UCGG- -5'
26298 5' -57.3 NC_005345.2 + 14932 0.76 0.125084
Target:  5'- gCGGCUGCAGCgg-----GCGGCGGCg -3'
miRNA:   3'- -GCCGACGUCGaacaugaCGCCGUCGg -5'
26298 5' -57.3 NC_005345.2 + 4911 0.76 0.132314
Target:  5'- aCGGCUGCGGCUgcGUAg-GCGGUuGCCc -3'
miRNA:   3'- -GCCGACGUCGAa-CAUgaCGCCGuCGG- -5'
26298 5' -57.3 NC_005345.2 + 33057 0.75 0.143884
Target:  5'- uGGC-GCgAGCUcggcgUGUACgUGCGGCAGCUg -3'
miRNA:   3'- gCCGaCG-UCGA-----ACAUG-ACGCCGUCGG- -5'
26298 5' -57.3 NC_005345.2 + 10694 0.74 0.16983
Target:  5'- cCGcGCUGUgcccGGCcUGUcCUGCGGCAGCUc -3'
miRNA:   3'- -GC-CGACG----UCGaACAuGACGCCGUCGG- -5'
26298 5' -57.3 NC_005345.2 + 44087 0.74 0.174542
Target:  5'- gGGCUGCAGCUgcucACaGCGGUcugcAGCCu -3'
miRNA:   3'- gCCGACGUCGAaca-UGaCGCCG----UCGG- -5'
26298 5' -57.3 NC_005345.2 + 5948 0.74 0.179371
Target:  5'- uGGCUGCggaccgGGCUcaUGcgGCgGCGGCAGCUg -3'
miRNA:   3'- gCCGACG------UCGA--ACa-UGaCGCCGUCGG- -5'
26298 5' -57.3 NC_005345.2 + 4207 0.74 0.184317
Target:  5'- gCGGC-GCGGCagaUGCUGCGGUAcGCCg -3'
miRNA:   3'- -GCCGaCGUCGaacAUGACGCCGU-CGG- -5'
26298 5' -57.3 NC_005345.2 + 41278 0.73 0.194572
Target:  5'- cCGGCgGguGggUGUGCUGgGGCcGCCu -3'
miRNA:   3'- -GCCGaCguCgaACAUGACgCCGuCGG- -5'
26298 5' -57.3 NC_005345.2 + 35000 0.73 0.210888
Target:  5'- uCGGCgccGgGGC----GCUGCGGCGGCCa -3'
miRNA:   3'- -GCCGa--CgUCGaacaUGACGCCGUCGG- -5'
26298 5' -57.3 NC_005345.2 + 14855 0.73 0.216583
Target:  5'- gGGCUGCAGCggGcGCUcgacGCGGCcgaggcgagucgGGCCg -3'
miRNA:   3'- gCCGACGUCGaaCaUGA----CGCCG------------UCGG- -5'
26298 5' -57.3 NC_005345.2 + 37415 0.73 0.216583
Target:  5'- uCGaGUcgUGCGGCgaguugGUACgcgGCGGCGGCCc -3'
miRNA:   3'- -GC-CG--ACGUCGaa----CAUGa--CGCCGUCGG- -5'
26298 5' -57.3 NC_005345.2 + 31193 0.73 0.216583
Target:  5'- gGGC-GCGGCggGUGCgGCGGguGCg -3'
miRNA:   3'- gCCGaCGUCGaaCAUGaCGCCguCGg -5'
26298 5' -57.3 NC_005345.2 + 5054 0.72 0.222409
Target:  5'- aGGCUGCAGacc--GCUGUGaGCAGCUg -3'
miRNA:   3'- gCCGACGUCgaacaUGACGC-CGUCGG- -5'
26298 5' -57.3 NC_005345.2 + 4892 0.72 0.227766
Target:  5'- -cGCUGCGagucgauGCUcGccgagcUGCUGCGGCAGCCg -3'
miRNA:   3'- gcCGACGU-------CGAaC------AUGACGCCGUCGG- -5'
26298 5' -57.3 NC_005345.2 + 24228 0.72 0.247059
Target:  5'- gCGGCUGCucccacacgccgAGCgugaacagGUGCccguccgacagGCGGCAGCCg -3'
miRNA:   3'- -GCCGACG------------UCGaa------CAUGa----------CGCCGUCGG- -5'
26298 5' -57.3 NC_005345.2 + 45517 0.71 0.281002
Target:  5'- gGGCUGCGGaCggcacacCUGCGGCgcgGGCCg -3'
miRNA:   3'- gCCGACGUC-Gaacau--GACGCCG---UCGG- -5'
26298 5' -57.3 NC_005345.2 + 39442 0.71 0.281002
Target:  5'- gCGGC-GCGGCUc--AC-GCGGCGGCCc -3'
miRNA:   3'- -GCCGaCGUCGAacaUGaCGCCGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.