miRNA display CGI


Results 1 - 20 of 78 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26298 5' -57.3 NC_005345.2 + 3030 0.67 0.482941
Target:  5'- gCGGCgGCAGCaUGcucGCuUGCGGgGGCg -3'
miRNA:   3'- -GCCGaCGUCGaACa--UG-ACGCCgUCGg -5'
26298 5' -57.3 NC_005345.2 + 4137 0.67 0.476796
Target:  5'- gCGGCUGCucgcggcgcucgucgAGCgggUGUcgAC-GCGGCAGgCg -3'
miRNA:   3'- -GCCGACG---------------UCGa--ACA--UGaCGCCGUCgG- -5'
26298 5' -57.3 NC_005345.2 + 4207 0.74 0.184317
Target:  5'- gCGGC-GCGGCagaUGCUGCGGUAcGCCg -3'
miRNA:   3'- -GCCGaCGUCGaacAUGACGCCGU-CGG- -5'
26298 5' -57.3 NC_005345.2 + 4272 0.66 0.556026
Target:  5'- cCGGCggugcggGCAGCUcgGgcucggGCUGCGGUucgacccauccgaGGUCg -3'
miRNA:   3'- -GCCGa------CGUCGAa-Ca-----UGACGCCG-------------UCGG- -5'
26298 5' -57.3 NC_005345.2 + 4892 0.72 0.227766
Target:  5'- -cGCUGCGagucgauGCUcGccgagcUGCUGCGGCAGCCg -3'
miRNA:   3'- gcCGACGU-------CGAaC------AUGACGCCGUCGG- -5'
26298 5' -57.3 NC_005345.2 + 4911 0.76 0.132314
Target:  5'- aCGGCUGCGGCUgcGUAg-GCGGUuGCCc -3'
miRNA:   3'- -GCCGACGUCGAa-CAUgaCGCCGuCGG- -5'
26298 5' -57.3 NC_005345.2 + 5054 0.72 0.222409
Target:  5'- aGGCUGCAGacc--GCUGUGaGCAGCUg -3'
miRNA:   3'- gCCGACGUCgaacaUGACGC-CGUCGG- -5'
26298 5' -57.3 NC_005345.2 + 5058 0.66 0.535512
Target:  5'- gGGCg--AGCcggUGUGCUGCGGUaaGGCg -3'
miRNA:   3'- gCCGacgUCGa--ACAUGACGCCG--UCGg -5'
26298 5' -57.3 NC_005345.2 + 5335 0.67 0.482941
Target:  5'- aGcGCUGCAGUgcgGUGCcguggGCGcGCuGCCc -3'
miRNA:   3'- gC-CGACGUCGaa-CAUGa----CGC-CGuCGG- -5'
26298 5' -57.3 NC_005345.2 + 5948 0.74 0.179371
Target:  5'- uGGCUGCggaccgGGCUcaUGcgGCgGCGGCAGCUg -3'
miRNA:   3'- gCCGACG------UCGA--ACa-UGaCGCCGUCGG- -5'
26298 5' -57.3 NC_005345.2 + 6471 0.71 0.288219
Target:  5'- gGGCcGCcgAGC-UGUACgGCGGCgAGCCc -3'
miRNA:   3'- gCCGaCG--UCGaACAUGaCGCCG-UCGG- -5'
26298 5' -57.3 NC_005345.2 + 6793 0.66 0.523756
Target:  5'- gCGGCUGgAGUcgcacagUUGguaUGCGGCGgacGCCa -3'
miRNA:   3'- -GCCGACgUCG-------AACaugACGCCGU---CGG- -5'
26298 5' -57.3 NC_005345.2 + 8667 0.69 0.368402
Target:  5'- cCGuGCUGCuGCUcGccGCgGCGGUGGCCg -3'
miRNA:   3'- -GC-CGACGuCGAaCa-UGaCGCCGUCGG- -5'
26298 5' -57.3 NC_005345.2 + 8844 0.67 0.472721
Target:  5'- gCGGCUGCGGCacggUGaACgggggcGCGGCAugacGCUc -3'
miRNA:   3'- -GCCGACGUCGa---ACaUGa-----CGCCGU----CGG- -5'
26298 5' -57.3 NC_005345.2 + 8929 0.68 0.432985
Target:  5'- aCGGCgGCcGCccccgUGggcggGCUGCGGguGCUc -3'
miRNA:   3'- -GCCGaCGuCGa----ACa----UGACGCCguCGG- -5'
26298 5' -57.3 NC_005345.2 + 9322 0.7 0.303848
Target:  5'- uCGGCgacccggGCGGCgaccagugcgacgcaUGgugGCUGCgGGCGGCCg -3'
miRNA:   3'- -GCCGa------CGUCGa--------------ACa--UGACG-CCGUCGG- -5'
26298 5' -57.3 NC_005345.2 + 9670 0.69 0.351203
Target:  5'- uGGCgcgGCAGUUga-ACUGCGGgAGUCc -3'
miRNA:   3'- gCCGa--CGUCGAacaUGACGCCgUCGG- -5'
26298 5' -57.3 NC_005345.2 + 10288 0.66 0.535512
Target:  5'- aGGagaUGCGGCgcggGCUGUGGgAGCg -3'
miRNA:   3'- gCCg--ACGUCGaacaUGACGCCgUCGg -5'
26298 5' -57.3 NC_005345.2 + 10694 0.74 0.16983
Target:  5'- cCGcGCUGUgcccGGCcUGUcCUGCGGCAGCUc -3'
miRNA:   3'- -GC-CGACG----UCGaACAuGACGCCGUCGG- -5'
26298 5' -57.3 NC_005345.2 + 11366 0.66 0.546278
Target:  5'- aCGGCaGCAGCcccgGU-C-GCGGCcGCCu -3'
miRNA:   3'- -GCCGaCGUCGaa--CAuGaCGCCGuCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.