miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26299 3' -52.6 NC_005345.2 + 47916 0.66 0.851985
Target:  5'- -aGGUcCGCGAACGGacguacgccGACCcgaagCGUGGCg -3'
miRNA:   3'- ugCUA-GCGCUUGUU---------CUGGaa---GCGCCG- -5'
26299 3' -52.6 NC_005345.2 + 36837 0.66 0.851985
Target:  5'- gGCGGU-GCaGGCcGGACCcUgGCGGCa -3'
miRNA:   3'- -UGCUAgCGcUUGuUCUGGaAgCGCCG- -5'
26299 3' -52.6 NC_005345.2 + 12090 0.66 0.851985
Target:  5'- -gGAUCGUGGACuGGAaCCcUCGCaaGGUg -3'
miRNA:   3'- ugCUAGCGCUUGuUCU-GGaAGCG--CCG- -5'
26299 3' -52.6 NC_005345.2 + 2911 0.66 0.851985
Target:  5'- -gGAUCgGCGGACcGGGCa---GCGGCc -3'
miRNA:   3'- ugCUAG-CGCUUGuUCUGgaagCGCCG- -5'
26299 3' -52.6 NC_005345.2 + 3303 0.66 0.851985
Target:  5'- uCGAggGCGucgGCGAGugCUUCgaggGUGGCg -3'
miRNA:   3'- uGCUagCGCu--UGUUCugGAAG----CGCCG- -5'
26299 3' -52.6 NC_005345.2 + 10601 0.66 0.851985
Target:  5'- gUGggCGCGuacgcCGAGACCUUCuGuCGGUa -3'
miRNA:   3'- uGCuaGCGCuu---GUUCUGGAAG-C-GCCG- -5'
26299 3' -52.6 NC_005345.2 + 5438 0.66 0.851985
Target:  5'- gGCGuUCGUaucGAGguCGAGGCCggcccaCGCGGCg -3'
miRNA:   3'- -UGCuAGCG---CUU--GUUCUGGaa----GCGCCG- -5'
26299 3' -52.6 NC_005345.2 + 2547 0.66 0.851985
Target:  5'- cGCGGUgGCGAcgGCGAGugCccggUCGaCGuGCu -3'
miRNA:   3'- -UGCUAgCGCU--UGUUCugGa---AGC-GC-CG- -5'
26299 3' -52.6 NC_005345.2 + 30366 0.66 0.843245
Target:  5'- gGCGGUCGCGca-GAGACUUgcucCGCaGUa -3'
miRNA:   3'- -UGCUAGCGCuugUUCUGGAa---GCGcCG- -5'
26299 3' -52.6 NC_005345.2 + 45845 0.66 0.843245
Target:  5'- gGCGG-CGCGGGCGAcGAUCgUgGgGGCg -3'
miRNA:   3'- -UGCUaGCGCUUGUU-CUGGaAgCgCCG- -5'
26299 3' -52.6 NC_005345.2 + 5405 0.66 0.843245
Target:  5'- gACGGUCGC-AACGAG-CgUgacgGCGGCg -3'
miRNA:   3'- -UGCUAGCGcUUGUUCuGgAag--CGCCG- -5'
26299 3' -52.6 NC_005345.2 + 40966 0.66 0.843245
Target:  5'- gGCGucuuUCGCGAuc--GACCUcggcgUCGgCGGCg -3'
miRNA:   3'- -UGCu---AGCGCUuguuCUGGA-----AGC-GCCG- -5'
26299 3' -52.6 NC_005345.2 + 5074 0.66 0.842358
Target:  5'- uGCGGUaagGCGAuCGAGgaguuccGCCgcgagCGCGGCa -3'
miRNA:   3'- -UGCUAg--CGCUuGUUC-------UGGaa---GCGCCG- -5'
26299 3' -52.6 NC_005345.2 + 37781 0.66 0.842358
Target:  5'- gGCGGcCGCGAcCGGGGCUgcugccgUUgGCGGUg -3'
miRNA:   3'- -UGCUaGCGCUuGUUCUGG-------AAgCGCCG- -5'
26299 3' -52.6 NC_005345.2 + 13586 0.66 0.834274
Target:  5'- -aGAUCGCGucccgGGCGAGcCCgaagGCGGCc -3'
miRNA:   3'- ugCUAGCGC-----UUGUUCuGGaag-CGCCG- -5'
26299 3' -52.6 NC_005345.2 + 36551 0.66 0.834274
Target:  5'- cCGAgCGCGuAGCc-GACgaUCGCGGCc -3'
miRNA:   3'- uGCUaGCGC-UUGuuCUGgaAGCGCCG- -5'
26299 3' -52.6 NC_005345.2 + 33508 0.66 0.834274
Target:  5'- -aGAUCgGCGAGCAguccGGGCag--GCGGCg -3'
miRNA:   3'- ugCUAG-CGCUUGU----UCUGgaagCGCCG- -5'
26299 3' -52.6 NC_005345.2 + 9865 0.66 0.834274
Target:  5'- cACGAgcaggggcugcUCGaCGAGCAgcagcGGGCCgaacUCGgCGGCg -3'
miRNA:   3'- -UGCU-----------AGC-GCUUGU-----UCUGGa---AGC-GCCG- -5'
26299 3' -52.6 NC_005345.2 + 9158 0.66 0.834274
Target:  5'- gACGG-CGCGGguGCAcGGGCCggUCGUGuGCg -3'
miRNA:   3'- -UGCUaGCGCU--UGU-UCUGGa-AGCGC-CG- -5'
26299 3' -52.6 NC_005345.2 + 37657 0.66 0.834274
Target:  5'- gGCGucggUGCGGGCc--GCCUgCGCGGCc -3'
miRNA:   3'- -UGCua--GCGCUUGuucUGGAaGCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.