miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26299 5' -56.7 NC_005345.2 + 42384 0.65 0.639453
Target:  5'- aCGCCGAGGucggGCAUguccgcgagcaucaCGGCGauGCGGGAc- -3'
miRNA:   3'- aGCGGCUCU----UGUG--------------GCCGC--UGUCCUag -5'
26299 5' -56.7 NC_005345.2 + 43513 0.66 0.631784
Target:  5'- gUCGCgGcGAAC-CCGGCGcucGCGgagcGGAUCg -3'
miRNA:   3'- -AGCGgCuCUUGuGGCCGC---UGU----CCUAG- -5'
26299 5' -56.7 NC_005345.2 + 40219 0.66 0.631784
Target:  5'- aCGUCGAGAcggUGCCGGUcgGGCAguuccGGAUCg -3'
miRNA:   3'- aGCGGCUCUu--GUGGCCG--CUGU-----CCUAG- -5'
26299 5' -56.7 NC_005345.2 + 10779 0.66 0.631784
Target:  5'- cCGUCGAGAcaGCCGcgcuGCGGCAGGc-- -3'
miRNA:   3'- aGCGGCUCUugUGGC----CGCUGUCCuag -5'
26299 5' -56.7 NC_005345.2 + 3877 0.66 0.631784
Target:  5'- aCGCCGAGugccuGCAgCgCGGCGaggGCGGGGc- -3'
miRNA:   3'- aGCGGCUCu----UGU-G-GCCGC---UGUCCUag -5'
26299 5' -56.7 NC_005345.2 + 6697 0.66 0.631784
Target:  5'- gCGUCGAuauCGCCGcGCGugGGGAc- -3'
miRNA:   3'- aGCGGCUcuuGUGGC-CGCugUCCUag -5'
26299 5' -56.7 NC_005345.2 + 7290 0.66 0.631784
Target:  5'- aUCGCCGAGGcgaaccgcaggACgaGCCGcgguGCGACGGcGUCg -3'
miRNA:   3'- -AGCGGCUCU-----------UG--UGGC----CGCUGUCcUAG- -5'
26299 5' -56.7 NC_005345.2 + 42120 0.66 0.631784
Target:  5'- aUCGCCGGccGGucgACCGGCGACccGGcGUCg -3'
miRNA:   3'- -AGCGGCU--CUug-UGGCCGCUGu-CC-UAG- -5'
26299 5' -56.7 NC_005345.2 + 39844 0.66 0.631784
Target:  5'- gUCGCCGAcGAacucaACGCCGGCcGCgAGGu-- -3'
miRNA:   3'- -AGCGGCU-CU-----UGUGGCCGcUG-UCCuag -5'
26299 5' -56.7 NC_005345.2 + 30906 0.66 0.631784
Target:  5'- cCGgCGAGcAGCACCGG-GAcCAGGGc- -3'
miRNA:   3'- aGCgGCUC-UUGUGGCCgCU-GUCCUag -5'
26299 5' -56.7 NC_005345.2 + 9753 0.66 0.631784
Target:  5'- aUGCUGcgguuccccugcAGGACACCGGCGGCA---UCg -3'
miRNA:   3'- aGCGGC------------UCUUGUGGCCGCUGUccuAG- -5'
26299 5' -56.7 NC_005345.2 + 28542 0.66 0.630688
Target:  5'- gUCGCCGAGAcuugcgaGCGCCcGCcGGCcccGGAUUu -3'
miRNA:   3'- -AGCGGCUCU-------UGUGGcCG-CUGu--CCUAG- -5'
26299 5' -56.7 NC_005345.2 + 34506 0.66 0.620828
Target:  5'- gUGCCGAGGACG-CGGUcgaGGCGGGccgCg -3'
miRNA:   3'- aGCGGCUCUUGUgGCCG---CUGUCCua-G- -5'
26299 5' -56.7 NC_005345.2 + 25521 0.66 0.620828
Target:  5'- -gGCCGGcGGCugCGuaaGCGGCAGGggCa -3'
miRNA:   3'- agCGGCUcUUGugGC---CGCUGUCCuaG- -5'
26299 5' -56.7 NC_005345.2 + 42409 0.66 0.620828
Target:  5'- cUGUgGAGugaccuCACCGGCGGCAuaccGAUCg -3'
miRNA:   3'- aGCGgCUCuu----GUGGCCGCUGUc---CUAG- -5'
26299 5' -56.7 NC_005345.2 + 39038 0.66 0.609882
Target:  5'- gUCuCCGGGAACcgGCCGGUgggcgcuacgcaGGCGGcGAUCg -3'
miRNA:   3'- -AGcGGCUCUUG--UGGCCG------------CUGUC-CUAG- -5'
26299 5' -56.7 NC_005345.2 + 23151 0.66 0.609882
Target:  5'- -aGCgCGAGGuuCACCaGaugGACAGGAUCa -3'
miRNA:   3'- agCG-GCUCUu-GUGGcCg--CUGUCCUAG- -5'
26299 5' -56.7 NC_005345.2 + 10287 0.66 0.609882
Target:  5'- -gGCCGGcGACACCGGaccCGAgCGGGAa- -3'
miRNA:   3'- agCGGCUcUUGUGGCC---GCU-GUCCUag -5'
26299 5' -56.7 NC_005345.2 + 45693 0.66 0.609882
Target:  5'- gCGaCCGuGGACAggucCCGGCGgGCGgGGGUCu -3'
miRNA:   3'- aGC-GGCuCUUGU----GGCCGC-UGU-CCUAG- -5'
26299 5' -56.7 NC_005345.2 + 6686 0.66 0.609882
Target:  5'- cUCGCCGA--GCA-CGGCGAgGGGuggCa -3'
miRNA:   3'- -AGCGGCUcuUGUgGCCGCUgUCCua-G- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.