miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
263 3' -57.3 AC_000008.1 + 35052 0.66 0.510981
Target:  5'- uGCCGGGaaaggugagGCGgCUcCGGAGaACC-GGGCg -3'
miRNA:   3'- -CGGUCC---------UGCgGA-GCCUCaUGGaCUCG- -5'
263 3' -57.3 AC_000008.1 + 10242 0.66 0.500429
Target:  5'- cCCGGcuGCGagagCUCGGuGUACCUGAGa -3'
miRNA:   3'- cGGUCc-UGCg---GAGCCuCAUGGACUCg -5'
263 3' -57.3 AC_000008.1 + 23734 0.66 0.500429
Target:  5'- uCCAGGGCGCgUCGGcuuGGgGCCc-AGCg -3'
miRNA:   3'- cGGUCCUGCGgAGCC---UCaUGGacUCG- -5'
263 3' -57.3 AC_000008.1 + 17061 0.66 0.489975
Target:  5'- cGCCAGcgacuggaaGAUGUCUUGGAaaaaaugaccGUggaACCUGGGCu -3'
miRNA:   3'- -CGGUC---------CUGCGGAGCCU----------CA---UGGACUCG- -5'
263 3' -57.3 AC_000008.1 + 12154 0.68 0.386365
Target:  5'- aGCCGacGCGCCcUGGAGgcagcuggggccggACCUGGGCu -3'
miRNA:   3'- -CGGUccUGCGGaGCCUCa-------------UGGACUCG- -5'
263 3' -57.3 AC_000008.1 + 19910 0.7 0.292298
Target:  5'- cCCAGGGCGCg-CGGuAGUGCCcGcGCa -3'
miRNA:   3'- cGGUCCUGCGgaGCC-UCAUGGaCuCG- -5'
263 3' -57.3 AC_000008.1 + 14869 0.7 0.277765
Target:  5'- uGCCAGGAUGCggggUGGAcUucacccacagccGCCUGAGCa -3'
miRNA:   3'- -CGGUCCUGCGga--GCCUcA------------UGGACUCG- -5'
263 3' -57.3 AC_000008.1 + 8467 0.71 0.257055
Target:  5'- gGCCuGGGCGUCUCuGGgaAGUACCacagugguggGAGCg -3'
miRNA:   3'- -CGGuCCUGCGGAG-CC--UCAUGGa---------CUCG- -5'
263 3' -57.3 AC_000008.1 + 7669 0.75 0.13377
Target:  5'- aCCAGGuaagguuCGCCUUGGuuUGCUUGGGCg -3'
miRNA:   3'- cGGUCCu------GCGGAGCCucAUGGACUCG- -5'
263 3' -57.3 AC_000008.1 + 16707 0.75 0.122895
Target:  5'- aGCCAGGGCGUUguaGGcAGUGCCaGAGUa -3'
miRNA:   3'- -CGGUCCUGCGGag-CC-UCAUGGaCUCG- -5'
263 3' -57.3 AC_000008.1 + 18872 1.12 0.000226
Target:  5'- gGCCAGGACGCCUCGGAGUACCUGAGCc -3'
miRNA:   3'- -CGGUCCUGCGGAGCCUCAUGGACUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.