miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
263 5' -57.8 AC_000008.1 + 19638 0.66 0.444638
Target:  5'- -cGCCCGUcgGCCGgUGcGACGUGCg-- -3'
miRNA:   3'- aaCGGGCG--CGGUgGCuCUGCAUGaag -5'
263 5' -57.8 AC_000008.1 + 24698 0.66 0.444638
Target:  5'- -gGCCCgGCGCCGCgGGGGuuCGUAa-UCa -3'
miRNA:   3'- aaCGGG-CGCGGUGgCUCU--GCAUgaAG- -5'
263 5' -57.8 AC_000008.1 + 12102 0.66 0.424839
Target:  5'- -aGCCCGCgGCCAUCGAccucGGCGgcggAUUUg -3'
miRNA:   3'- aaCGGGCG-CGGUGGCU----CUGCa---UGAAg -5'
263 5' -57.8 AC_000008.1 + 23809 0.66 0.424839
Target:  5'- cUGCCCGUGCCAgCCaGGGCccuuugcaggcuGUGCaUCa -3'
miRNA:   3'- aACGGGCGCGGU-GGcUCUG------------CAUGaAG- -5'
263 5' -57.8 AC_000008.1 + 21825 0.66 0.395218
Target:  5'- -cGCCUGCGCCauagucaauacgGCCGgucgcgagacuggGGGCGUACa-- -3'
miRNA:   3'- aaCGGGCGCGG------------UGGC-------------UCUGCAUGaag -5'
263 5' -57.8 AC_000008.1 + 27309 0.67 0.386872
Target:  5'- -cGCCCGCGUCACCGcuuuuAGAU--GCaUCa -3'
miRNA:   3'- aaCGGGCGCGGUGGC-----UCUGcaUGaAG- -5'
263 5' -57.8 AC_000008.1 + 26388 0.67 0.359902
Target:  5'- -cGgCCGCGCCgucACCGAGACcaUGCgccgUCg -3'
miRNA:   3'- aaCgGGCGCGG---UGGCUCUGc-AUGa---AG- -5'
263 5' -57.8 AC_000008.1 + 4519 0.67 0.359902
Target:  5'- gUUGCCCGCGaCCAUU-AGAgGUGCggCg -3'
miRNA:   3'- -AACGGGCGC-GGUGGcUCUgCAUGaaG- -5'
263 5' -57.8 AC_000008.1 + 23563 0.68 0.326032
Target:  5'- -cGCCCGCaCCGCCGGGucCGUuGCgUCu -3'
miRNA:   3'- aaCGGGCGcGGUGGCUCu-GCA-UGaAG- -5'
263 5' -57.8 AC_000008.1 + 23397 0.68 0.317943
Target:  5'- -gGUuuGCGCgCGCCGGGACcaccGCUUCc -3'
miRNA:   3'- aaCGggCGCG-GUGGCUCUGca--UGAAG- -5'
263 5' -57.8 AC_000008.1 + 13745 0.69 0.279771
Target:  5'- -cGCCCGCGCCugCuGGGCGa----- -3'
miRNA:   3'- aaCGGGCGCGGugGcUCUGCaugaag -5'
263 5' -57.8 AC_000008.1 + 18109 0.69 0.279771
Target:  5'- gUGCgacgCGCGCCGCCGccGGugGUGCg-- -3'
miRNA:   3'- aACGg---GCGCGGUGGC--UCugCAUGaag -5'
263 5' -57.8 AC_000008.1 + 27234 0.69 0.258667
Target:  5'- cUGCCCGCGCgCGgCGccGACGUGCc-- -3'
miRNA:   3'- aACGGGCGCG-GUgGCu-CUGCAUGaag -5'
263 5' -57.8 AC_000008.1 + 23555 0.7 0.232575
Target:  5'- -cGCauaccaCGCGCCACUGGGuCGU-CUUCa -3'
miRNA:   3'- aaCGg-----GCGCGGUGGCUCuGCAuGAAG- -5'
263 5' -57.8 AC_000008.1 + 18914 1.07 0.000349
Target:  5'- uUUGCCCGCGCCACCGAGACGUACUUCa -3'
miRNA:   3'- -AACGGGCGCGGUGGCUCUGCAUGAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.