miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2630 5' -56.2 NC_001491.2 + 93717 0.66 0.918998
Target:  5'- cGAGGCUaGCCGUCGcucuauACCgCUagAGGCGc -3'
miRNA:   3'- uCUUUGG-CGGCAGC------UGG-GAagUCCGC- -5'
2630 5' -56.2 NC_001491.2 + 140723 0.66 0.918998
Target:  5'- cGcuACCuagguaCGUCGACCUucgaaUUCAGGCGg -3'
miRNA:   3'- uCuuUGGcg----GCAGCUGGG-----AAGUCCGC- -5'
2630 5' -56.2 NC_001491.2 + 1344 0.66 0.913255
Target:  5'- cGAGcUCGUCGUCGGgcUCCggCAGGCa -3'
miRNA:   3'- uCUUuGGCGGCAGCU--GGGaaGUCCGc -5'
2630 5' -56.2 NC_001491.2 + 19107 0.66 0.907278
Target:  5'- uGGGugCGCUGUUGGCCCggaCAcGGUa -3'
miRNA:   3'- uCUUugGCGGCAGCUGGGaa-GU-CCGc -5'
2630 5' -56.2 NC_001491.2 + 131207 0.66 0.901069
Target:  5'- cGGAAAUUGCCGgacCG-CUCUUgAGGUGg -3'
miRNA:   3'- -UCUUUGGCGGCa--GCuGGGAAgUCCGC- -5'
2630 5' -56.2 NC_001491.2 + 82239 0.67 0.881078
Target:  5'- -aAAGCCGCUG-CGGCCUUUUuGGUGc -3'
miRNA:   3'- ucUUUGGCGGCaGCUGGGAAGuCCGC- -5'
2630 5' -56.2 NC_001491.2 + 8954 0.67 0.859124
Target:  5'- uGGAGCCGCCGagCGACCCcccgaauaccucUUUGGGg- -3'
miRNA:   3'- uCUUUGGCGGCa-GCUGGG------------AAGUCCgc -5'
2630 5' -56.2 NC_001491.2 + 5937 0.67 0.851394
Target:  5'- cAGAAGCCGCCcggGUCuGCCCggggaAGGUa -3'
miRNA:   3'- -UCUUUGGCGG---CAGcUGGGaag--UCCGc -5'
2630 5' -56.2 NC_001491.2 + 90385 0.67 0.843468
Target:  5'- cGAGGCCgGCC-UCGAacCCCgugaUCAGGUGg -3'
miRNA:   3'- uCUUUGG-CGGcAGCU--GGGa---AGUCCGC- -5'
2630 5' -56.2 NC_001491.2 + 12529 0.68 0.827055
Target:  5'- cGGcgGCgGCCGUgGACCgagCGGGCGc -3'
miRNA:   3'- -UCuuUGgCGGCAgCUGGgaaGUCCGC- -5'
2630 5' -56.2 NC_001491.2 + 3502 0.68 0.809943
Target:  5'- gGGAGaggGCCGCCGUCuccaGCCCggcCGGGUu -3'
miRNA:   3'- -UCUU---UGGCGGCAGc---UGGGaa-GUCCGc -5'
2630 5' -56.2 NC_001491.2 + 130665 0.69 0.783102
Target:  5'- uGGggGgUGCCGguagCGGCCCUUgGGGa- -3'
miRNA:   3'- -UCuuUgGCGGCa---GCUGGGAAgUCCgc -5'
2630 5' -56.2 NC_001491.2 + 82177 0.69 0.773876
Target:  5'- cGAGcACCGCCGUCGgACCCgaacUCGacGCGg -3'
miRNA:   3'- uCUU-UGGCGGCAGC-UGGGa---AGUc-CGC- -5'
2630 5' -56.2 NC_001491.2 + 28647 0.7 0.735812
Target:  5'- -cGAGCCGCCGggGAgCCUcgCGGGCa -3'
miRNA:   3'- ucUUUGGCGGCagCUgGGAa-GUCCGc -5'
2630 5' -56.2 NC_001491.2 + 128975 0.76 0.405591
Target:  5'- uGGAAACCGCCaccGUCGAUgCU-CAGGCu -3'
miRNA:   3'- -UCUUUGGCGG---CAGCUGgGAaGUCCGc -5'
2630 5' -56.2 NC_001491.2 + 144494 1.08 0.003493
Target:  5'- cAGAAACCGCCGUCGACCCUUCAGGCGc -3'
miRNA:   3'- -UCUUUGGCGGCAGCUGGGAAGUCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.