miRNA display CGI


Results 1 - 20 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26300 3' -59.4 NC_005345.2 + 1094 0.65 0.495506
Target:  5'- cGGCGAcgaGCgGUgcGCGCCGGacgagcaCAGC-CGCg -3'
miRNA:   3'- -CCGCU---UGgCGa-CGUGGCC-------GUCGaGCG- -5'
26300 3' -59.4 NC_005345.2 + 14816 0.65 0.492477
Target:  5'- cGGCGGG-CGCggguguggucgacGC-CCGaGCAGCUUGCc -3'
miRNA:   3'- -CCGCUUgGCGa------------CGuGGC-CGUCGAGCG- -5'
26300 3' -59.4 NC_005345.2 + 16202 0.66 0.486445
Target:  5'- cGGCGu-CCGCcucGCGCuCGacaaGCAGCUgCGCu -3'
miRNA:   3'- -CCGCuuGGCGa--CGUG-GC----CGUCGA-GCG- -5'
26300 3' -59.4 NC_005345.2 + 12848 0.66 0.486445
Target:  5'- cGGCGAggACCGgUGaCGUCgugggGGUGGCUCGCc -3'
miRNA:   3'- -CCGCU--UGGCgAC-GUGG-----CCGUCGAGCG- -5'
26300 3' -59.4 NC_005345.2 + 34524 0.66 0.480448
Target:  5'- aGGCGGGCCGCggccucGCGggcguacccgucgauCCGG-AGC-CGCu -3'
miRNA:   3'- -CCGCUUGGCGa-----CGU---------------GGCCgUCGaGCG- -5'
26300 3' -59.4 NC_005345.2 + 21940 0.66 0.480448
Target:  5'- uGCGAG-CGCUGCGCCGaccgcugccgaucaCGGCcCGCg -3'
miRNA:   3'- cCGCUUgGCGACGUGGCc-------------GUCGaGCG- -5'
26300 3' -59.4 NC_005345.2 + 39129 0.66 0.476471
Target:  5'- cGGCGAACCugugggagucGCUcccgcuCACCGGC-GCcgugUCGCa -3'
miRNA:   3'- -CCGCUUGG----------CGAc-----GUGGCCGuCG----AGCG- -5'
26300 3' -59.4 NC_005345.2 + 18984 0.66 0.476471
Target:  5'- gGGUc-GCCGCUG-GCCGGCGGgaCGa -3'
miRNA:   3'- -CCGcuUGGCGACgUGGCCGUCgaGCg -5'
26300 3' -59.4 NC_005345.2 + 42152 0.66 0.476471
Target:  5'- uGGCGAcGCUGCcugucgGCGcCCGGcCAGCagCGUg -3'
miRNA:   3'- -CCGCU-UGGCGa-----CGU-GGCC-GUCGa-GCG- -5'
26300 3' -59.4 NC_005345.2 + 29666 0.66 0.476471
Target:  5'- gGGCGGgagaACCGCaGguCaGGCAGCgucuaccgUCGCg -3'
miRNA:   3'- -CCGCU----UGGCGaCguGgCCGUCG--------AGCG- -5'
26300 3' -59.4 NC_005345.2 + 35766 0.66 0.476471
Target:  5'- cGGCGGGgCGggGCGguggguUCGGUGGCUCGg -3'
miRNA:   3'- -CCGCUUgGCgaCGU------GGCCGUCGAGCg -5'
26300 3' -59.4 NC_005345.2 + 19258 0.66 0.476471
Target:  5'- cGCaGGACCGggaUGCcgaCGGCGGC-CGCg -3'
miRNA:   3'- cCG-CUUGGCg--ACGug-GCCGUCGaGCG- -5'
26300 3' -59.4 NC_005345.2 + 27606 0.66 0.470535
Target:  5'- cGGCGuucccuucccuGCUGCUcuucaccgcauggugGUGCCGGCAcagcGCUUGCa -3'
miRNA:   3'- -CCGCu----------UGGCGA---------------CGUGGCCGU----CGAGCG- -5'
26300 3' -59.4 NC_005345.2 + 36503 0.66 0.466598
Target:  5'- cGGCGGccgACCGC-GCcCCGGCGaaCUgGCg -3'
miRNA:   3'- -CCGCU---UGGCGaCGuGGCCGUc-GAgCG- -5'
26300 3' -59.4 NC_005345.2 + 7978 0.66 0.466598
Target:  5'- uGGaguGCCGCaGUcgauccgguucaACCGGCGGC-CGCg -3'
miRNA:   3'- -CCgcuUGGCGaCG------------UGGCCGUCGaGCG- -5'
26300 3' -59.4 NC_005345.2 + 40490 0.66 0.466598
Target:  5'- cGGCGAgaucGCCGCgacgaucgGCGCCGaGguGUacUGCg -3'
miRNA:   3'- -CCGCU----UGGCGa-------CGUGGC-CguCGa-GCG- -5'
26300 3' -59.4 NC_005345.2 + 45759 0.66 0.466598
Target:  5'- aGGgGGA-UGCcGCGCCGGaccucgccgccCAGCUCGUa -3'
miRNA:   3'- -CCgCUUgGCGaCGUGGCC-----------GUCGAGCG- -5'
26300 3' -59.4 NC_005345.2 + 32823 0.66 0.466598
Target:  5'- -aCGAGCuuuCGCUGCGCgGGagugAGCUCGg -3'
miRNA:   3'- ccGCUUG---GCGACGUGgCCg---UCGAGCg -5'
26300 3' -59.4 NC_005345.2 + 1540 0.66 0.466598
Target:  5'- gGGCGcgucgagccAACCGg-GCACCgugaGGCGGCagUCGCc -3'
miRNA:   3'- -CCGC---------UUGGCgaCGUGG----CCGUCG--AGCG- -5'
26300 3' -59.4 NC_005345.2 + 35945 0.66 0.466598
Target:  5'- gGGUGuGCuCGCcGCGCgGGCuGC-CGCu -3'
miRNA:   3'- -CCGCuUG-GCGaCGUGgCCGuCGaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.