miRNA display CGI


Results 1 - 20 of 313 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26300 3' -59.4 NC_005345.2 + 1094 0.65 0.495506
Target:  5'- cGGCGAcgaGCgGUgcGCGCCGGacgagcaCAGC-CGCg -3'
miRNA:   3'- -CCGCU---UGgCGa-CGUGGCC-------GUCGaGCG- -5'
26300 3' -59.4 NC_005345.2 + 14816 0.65 0.492477
Target:  5'- cGGCGGG-CGCggguguggucgacGC-CCGaGCAGCUUGCc -3'
miRNA:   3'- -CCGCUUgGCGa------------CGuGGC-CGUCGAGCG- -5'
26300 3' -59.4 NC_005345.2 + 32823 0.66 0.466598
Target:  5'- -aCGAGCuuuCGCUGCGCgGGagugAGCUCGg -3'
miRNA:   3'- ccGCUUG---GCGACGUGgCCg---UCGAGCg -5'
26300 3' -59.4 NC_005345.2 + 33014 0.66 0.460726
Target:  5'- gGGCGucgacgaucgggcucGGCCGCggggUGCGguCCGGCucgacguugGGCUCGUa -3'
miRNA:   3'- -CCGC---------------UUGGCG----ACGU--GGCCG---------UCGAGCG- -5'
26300 3' -59.4 NC_005345.2 + 16070 0.66 0.460726
Target:  5'- gGGCGGugCGUgGCAgCuGCcgcacguacacgccgAGCUCGCg -3'
miRNA:   3'- -CCGCUugGCGaCGUgGcCG---------------UCGAGCG- -5'
26300 3' -59.4 NC_005345.2 + 11335 0.66 0.456833
Target:  5'- gGGCcguuccGGCCGUUgGUGCCGaGCAGCagcgUCGCa -3'
miRNA:   3'- -CCGc-----UUGGCGA-CGUGGC-CGUCG----AGCG- -5'
26300 3' -59.4 NC_005345.2 + 6989 0.66 0.456833
Target:  5'- uGCuGGCCGg-GCGCCgacaGGCAGCgUCGCc -3'
miRNA:   3'- cCGcUUGGCgaCGUGG----CCGUCG-AGCG- -5'
26300 3' -59.4 NC_005345.2 + 24150 0.66 0.456833
Target:  5'- cGGCG-ACCGCggcgaGCACCucgacgacgGGCA-CUUGCc -3'
miRNA:   3'- -CCGCuUGGCGa----CGUGG---------CCGUcGAGCG- -5'
26300 3' -59.4 NC_005345.2 + 12430 0.66 0.456833
Target:  5'- cGCGGACgGCU---UCGGCAGCU-GCa -3'
miRNA:   3'- cCGCUUGgCGAcguGGCCGUCGAgCG- -5'
26300 3' -59.4 NC_005345.2 + 19986 0.66 0.456833
Target:  5'- aGCGGGaucuuuUCGCUG-AUCgggGGCAGCUCGCc -3'
miRNA:   3'- cCGCUU------GGCGACgUGG---CCGUCGAGCG- -5'
26300 3' -59.4 NC_005345.2 + 1540 0.66 0.466598
Target:  5'- gGGCGcgucgagccAACCGg-GCACCgugaGGCGGCagUCGCc -3'
miRNA:   3'- -CCGC---------UUGGCgaCGUGG----CCGUCG--AGCG- -5'
26300 3' -59.4 NC_005345.2 + 9951 0.66 0.466598
Target:  5'- -uCGAGCagcaGCUcGCGCgCGGUgAGCUCGUg -3'
miRNA:   3'- ccGCUUGg---CGA-CGUG-GCCG-UCGAGCG- -5'
26300 3' -59.4 NC_005345.2 + 35766 0.66 0.476471
Target:  5'- cGGCGGGgCGggGCGguggguUCGGUGGCUCGg -3'
miRNA:   3'- -CCGCUUgGCgaCGU------GGCCGUCGAGCg -5'
26300 3' -59.4 NC_005345.2 + 29666 0.66 0.476471
Target:  5'- gGGCGGgagaACCGCaGguCaGGCAGCgucuaccgUCGCg -3'
miRNA:   3'- -CCGCU----UGGCGaCguGgCCGUCG--------AGCG- -5'
26300 3' -59.4 NC_005345.2 + 19258 0.66 0.476471
Target:  5'- cGCaGGACCGggaUGCcgaCGGCGGC-CGCg -3'
miRNA:   3'- cCG-CUUGGCg--ACGug-GCCGUCGaGCG- -5'
26300 3' -59.4 NC_005345.2 + 27606 0.66 0.470535
Target:  5'- cGGCGuucccuucccuGCUGCUcuucaccgcauggugGUGCCGGCAcagcGCUUGCa -3'
miRNA:   3'- -CCGCu----------UGGCGA---------------CGUGGCCGU----CGAGCG- -5'
26300 3' -59.4 NC_005345.2 + 35945 0.66 0.466598
Target:  5'- gGGUGuGCuCGCcGCGCgGGCuGC-CGCu -3'
miRNA:   3'- -CCGCuUG-GCGaCGUGgCCGuCGaGCG- -5'
26300 3' -59.4 NC_005345.2 + 25520 0.66 0.466598
Target:  5'- cGGCGAacaccaugcgcaGCCG-UGC-CCGGUccgccGGCgUCGCg -3'
miRNA:   3'- -CCGCU------------UGGCgACGuGGCCG-----UCG-AGCG- -5'
26300 3' -59.4 NC_005345.2 + 24496 0.66 0.466598
Target:  5'- cGUGAGCCGCUcgAUCGGCgaccaacccGGCcCGCa -3'
miRNA:   3'- cCGCUUGGCGAcgUGGCCG---------UCGaGCG- -5'
26300 3' -59.4 NC_005345.2 + 45759 0.66 0.466598
Target:  5'- aGGgGGA-UGCcGCGCCGGaccucgccgccCAGCUCGUa -3'
miRNA:   3'- -CCgCUUgGCGaCGUGGCC-----------GUCGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.