miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26300 5' -57.4 NC_005345.2 + 27036 0.66 0.588057
Target:  5'- cGAgucUGUGCUgCuc-GCCaCCGAGCCgCCg -3'
miRNA:   3'- aCU---ACACGAgGucaCGG-GGCUUGG-GG- -5'
26300 5' -57.4 NC_005345.2 + 429 0.66 0.588057
Target:  5'- ----aUGCggCCGGUGUCCCGGuucuucACCUCg -3'
miRNA:   3'- acuacACGa-GGUCACGGGGCU------UGGGG- -5'
26300 5' -57.4 NC_005345.2 + 26684 0.66 0.577195
Target:  5'- aUGAUGUGCUgCAcGU-CCCCGAGgCg- -3'
miRNA:   3'- -ACUACACGAgGU-CAcGGGGCUUgGgg -5'
26300 5' -57.4 NC_005345.2 + 2816 0.66 0.577195
Target:  5'- cGAUcgccUGCUCCAGcGCCgCGAGgCCg -3'
miRNA:   3'- aCUAc---ACGAGGUCaCGGgGCUUgGGg -5'
26300 5' -57.4 NC_005345.2 + 48159 0.66 0.555613
Target:  5'- aUGAgGUGCUgaacUCGaUGCUCCGGGCCgCCg -3'
miRNA:   3'- -ACUaCACGA----GGUcACGGGGCUUGG-GG- -5'
26300 5' -57.4 NC_005345.2 + 44662 0.66 0.55454
Target:  5'- cGGUGggcacgGCUcgucgagCCGGacacgGCCgCCGGGCCCCc -3'
miRNA:   3'- aCUACa-----CGA-------GGUCa----CGG-GGCUUGGGG- -5'
26300 5' -57.4 NC_005345.2 + 47367 0.66 0.534273
Target:  5'- cGGUGUGg-CgAGUGCUgCCuGACCCCg -3'
miRNA:   3'- aCUACACgaGgUCACGG-GGcUUGGGG- -5'
26300 5' -57.4 NC_005345.2 + 5779 0.66 0.534273
Target:  5'- ---gGUGCUCgGcGUGCcguaCCCGGccgACCCCg -3'
miRNA:   3'- acuaCACGAGgU-CACG----GGGCU---UGGGG- -5'
26300 5' -57.4 NC_005345.2 + 41287 0.67 0.523711
Target:  5'- gGGUGUGCUggggccgccUCGGUGCCggcgccggcggCUGGACgCCCu -3'
miRNA:   3'- aCUACACGA---------GGUCACGG-----------GGCUUG-GGG- -5'
26300 5' -57.4 NC_005345.2 + 17825 0.67 0.523711
Target:  5'- cGgcGUGCcccuUCCcGcccgGCCgCCGGGCCCCg -3'
miRNA:   3'- aCuaCACG----AGGuCa---CGG-GGCUUGGGG- -5'
26300 5' -57.4 NC_005345.2 + 1002 0.67 0.523711
Target:  5'- cGGUGUGUcgUCCGGUGgaUCGAGCUCg -3'
miRNA:   3'- aCUACACG--AGGUCACggGGCUUGGGg -5'
26300 5' -57.4 NC_005345.2 + 30338 0.67 0.51323
Target:  5'- gGAg--GaaCCcaAGUGCCCCGGcaACCCCg -3'
miRNA:   3'- aCUacaCgaGG--UCACGGGGCU--UGGGG- -5'
26300 5' -57.4 NC_005345.2 + 13770 0.67 0.502836
Target:  5'- cGAgcucgGUGCgaUCgAGUucuacgacggcgGCCCCGAcacGCCCCu -3'
miRNA:   3'- aCUa----CACG--AGgUCA------------CGGGGCU---UGGGG- -5'
26300 5' -57.4 NC_005345.2 + 9298 0.67 0.472232
Target:  5'- gGAUGUcCUgCCAGgugcgGCCggCCGAGCCCg -3'
miRNA:   3'- aCUACAcGA-GGUCa----CGG--GGCUUGGGg -5'
26300 5' -57.4 NC_005345.2 + 20053 0.67 0.472232
Target:  5'- gGAUG-GUUCaCGGaGCCCuCGAAgCCCa -3'
miRNA:   3'- aCUACaCGAG-GUCaCGGG-GCUUgGGG- -5'
26300 5' -57.4 NC_005345.2 + 20564 0.68 0.432955
Target:  5'- cGGUGUGCggUCGGUcacauUCCCGGGCCCa -3'
miRNA:   3'- aCUACACGa-GGUCAc----GGGGCUUGGGg -5'
26300 5' -57.4 NC_005345.2 + 8592 0.68 0.423436
Target:  5'- gUGAUccGUGCcUCGGUcGgCCCGAucGCCCCg -3'
miRNA:   3'- -ACUA--CACGaGGUCA-CgGGGCU--UGGGG- -5'
26300 5' -57.4 NC_005345.2 + 17418 0.69 0.395647
Target:  5'- -----cGCaCCcgaGGUGCaCCCGAACCCCg -3'
miRNA:   3'- acuacaCGaGG---UCACG-GGGCUUGGGG- -5'
26300 5' -57.4 NC_005345.2 + 19129 0.69 0.366473
Target:  5'- aUGGUG-GCUgCGG-GCcgcauggcgcgccaCCCGGACCCCg -3'
miRNA:   3'- -ACUACaCGAgGUCaCG--------------GGGCUUGGGG- -5'
26300 5' -57.4 NC_005345.2 + 29078 0.7 0.327548
Target:  5'- cGGUGUGC-CCGGgguggGCUUCGAggGCUCCg -3'
miRNA:   3'- aCUACACGaGGUCa----CGGGGCU--UGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.