miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26301 3' -54.9 NC_005345.2 + 40468 0.66 0.685619
Target:  5'- gCGACAAcCCGuGGGAggcGAUCGGCGagaucGCCGc -3'
miRNA:   3'- -GCUGUUcGGC-UCCU---UUAGUCGC-----CGGC- -5'
26301 3' -54.9 NC_005345.2 + 29799 0.66 0.684521
Target:  5'- uCGACGGGgaucCCGAGGGAGUCcaaccgggcccgcAGauCGGCCa -3'
miRNA:   3'- -GCUGUUC----GGCUCCUUUAG-------------UC--GCCGGc -5'
26301 3' -54.9 NC_005345.2 + 33852 0.66 0.682325
Target:  5'- gCGACGAaccucGCCGAGGcguUCGGCGucgacgugggggacGCCGc -3'
miRNA:   3'- -GCUGUU-----CGGCUCCuuuAGUCGC--------------CGGC- -5'
26301 3' -54.9 NC_005345.2 + 17345 0.67 0.674621
Target:  5'- uCGACGucGUCGAGG---UCGGCGGaCUGg -3'
miRNA:   3'- -GCUGUu-CGGCUCCuuuAGUCGCC-GGC- -5'
26301 3' -54.9 NC_005345.2 + 24191 0.67 0.673518
Target:  5'- uCGACcggccgcccgucgGGGCCGAGuucGAGucgCGGCGGCUGc -3'
miRNA:   3'- -GCUG-------------UUCGGCUC---CUUua-GUCGCCGGC- -5'
26301 3' -54.9 NC_005345.2 + 16425 0.67 0.663581
Target:  5'- gGGCccacGCCGAGGGAcUCGGCugguucGCCGa -3'
miRNA:   3'- gCUGuu--CGGCUCCUUuAGUCGc-----CGGC- -5'
26301 3' -54.9 NC_005345.2 + 6602 0.67 0.663581
Target:  5'- gCGaACGAGCUGuGGAccggCGGCGGuuGc -3'
miRNA:   3'- -GC-UGUUCGGCuCCUuua-GUCGCCggC- -5'
26301 3' -54.9 NC_005345.2 + 12999 0.67 0.663581
Target:  5'- gGACccGCCGAu---GUCGGCGGCCc -3'
miRNA:   3'- gCUGuuCGGCUccuuUAGUCGCCGGc -5'
26301 3' -54.9 NC_005345.2 + 39762 0.67 0.663581
Target:  5'- gCGGCAGGCUGAa-----CAGCGGCUGc -3'
miRNA:   3'- -GCUGUUCGGCUccuuuaGUCGCCGGC- -5'
26301 3' -54.9 NC_005345.2 + 31816 0.67 0.663581
Target:  5'- uCGACGAcGUCGAGGcGAggCAGCuGGUCa -3'
miRNA:   3'- -GCUGUU-CGGCUCC-UUuaGUCG-CCGGc -5'
26301 3' -54.9 NC_005345.2 + 41648 0.67 0.663581
Target:  5'- uCGGCGAGCCacuccagcguGAGGGGcuucUCGGC-GCCGa -3'
miRNA:   3'- -GCUGUUCGG----------CUCCUUu---AGUCGcCGGC- -5'
26301 3' -54.9 NC_005345.2 + 31465 0.67 0.652512
Target:  5'- cCGGCGcgguucguacGGaUCGAGcGGAUCGGCGGCCc -3'
miRNA:   3'- -GCUGU----------UC-GGCUCcUUUAGUCGCCGGc -5'
26301 3' -54.9 NC_005345.2 + 36070 0.67 0.652512
Target:  5'- -cGCAGGucCCGGGGAAGaugcUCGGCgGGCUGa -3'
miRNA:   3'- gcUGUUC--GGCUCCUUU----AGUCG-CCGGC- -5'
26301 3' -54.9 NC_005345.2 + 19258 0.67 0.652512
Target:  5'- -cGCAGGaCCG-GGAugccgaCGGCGGCCGc -3'
miRNA:   3'- gcUGUUC-GGCuCCUuua---GUCGCCGGC- -5'
26301 3' -54.9 NC_005345.2 + 30107 0.67 0.652512
Target:  5'- aCGGCcaGGGCggCGAGGcggagCAGCGGCCc -3'
miRNA:   3'- -GCUG--UUCG--GCUCCuuua-GUCGCCGGc -5'
26301 3' -54.9 NC_005345.2 + 19022 0.67 0.641424
Target:  5'- uCGACGucgccgcccgAGCCGucgguacGGggGUCGGCgaacccGGCCGu -3'
miRNA:   3'- -GCUGU----------UCGGCu------CCuuUAGUCG------CCGGC- -5'
26301 3' -54.9 NC_005345.2 + 7037 0.67 0.641424
Target:  5'- uCGACcGGCCGGcGAucgaGGCGGCCc -3'
miRNA:   3'- -GCUGuUCGGCUcCUuuagUCGCCGGc -5'
26301 3' -54.9 NC_005345.2 + 1 0.67 0.641424
Target:  5'- -cGCAGGUC-AGGGAGUCAaCGGCCc -3'
miRNA:   3'- gcUGUUCGGcUCCUUUAGUcGCCGGc -5'
26301 3' -54.9 NC_005345.2 + 27147 0.67 0.641424
Target:  5'- cCGGCAuGCCGccGugcggCAGCGGCCc -3'
miRNA:   3'- -GCUGUuCGGCucCuuua-GUCGCCGGc -5'
26301 3' -54.9 NC_005345.2 + 32915 0.67 0.630327
Target:  5'- gGuACGcAGCCGGGGGAAUCga-GGCCu -3'
miRNA:   3'- gC-UGU-UCGGCUCCUUUAGucgCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.