miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26301 5' -65.7 NC_005345.2 + 40234 0.66 0.230944
Target:  5'- -gCGGCCGCCGUgaUCCuggCGAGCgG-GGa -3'
miRNA:   3'- agGCCGGCGGCGg-AGG---GCUCGgCaCC- -5'
26301 5' -65.7 NC_005345.2 + 21995 0.66 0.230944
Target:  5'- cUCgGGCCGCUGCCgcacggcggcaUgCCGGGCCcgccGGa -3'
miRNA:   3'- -AGgCCGGCGGCGG-----------AgGGCUCGGca--CC- -5'
26301 5' -65.7 NC_005345.2 + 11925 0.66 0.230944
Target:  5'- -aCGGCaCGCCGCCgacaCgCGAgggcgaacgGCUGUGGa -3'
miRNA:   3'- agGCCG-GCGGCGGa---GgGCU---------CGGCACC- -5'
26301 5' -65.7 NC_005345.2 + 15723 0.66 0.230944
Target:  5'- gCgGGCCGcCCGCCaCCCu-GCUGUGa -3'
miRNA:   3'- aGgCCGGC-GGCGGaGGGcuCGGCACc -5'
26301 5' -65.7 NC_005345.2 + 25552 0.66 0.230944
Target:  5'- gCCGGCgucgcgccgaaCGCCGCgaCCCGcAGCCGc-- -3'
miRNA:   3'- aGGCCG-----------GCGGCGgaGGGC-UCGGCacc -5'
26301 5' -65.7 NC_005345.2 + 26338 0.67 0.225374
Target:  5'- gUUCGuGCCGUCGCCgUCCGcGgUGUGGg -3'
miRNA:   3'- -AGGC-CGGCGGCGGaGGGCuCgGCACC- -5'
26301 5' -65.7 NC_005345.2 + 24888 0.67 0.225374
Target:  5'- aUCGGCUGCCGCCUgucggacgggcaCCUGuucacgcucGGCgUGUGGg -3'
miRNA:   3'- aGGCCGGCGGCGGA------------GGGC---------UCG-GCACC- -5'
26301 5' -65.7 NC_005345.2 + 12914 0.67 0.225374
Target:  5'- -aCGGCCGCCuaCUCCCucGcCCGUa- -3'
miRNA:   3'- agGCCGGCGGcgGAGGGcuC-GGCAcc -5'
26301 5' -65.7 NC_005345.2 + 39017 0.67 0.225374
Target:  5'- -gCGGCCGCCGCCUguacCUCGGGgaUG-GGg -3'
miRNA:   3'- agGCCGGCGGCGGA----GGGCUCg-GCaCC- -5'
26301 5' -65.7 NC_005345.2 + 15893 0.67 0.225374
Target:  5'- uUCCGGCgUGCCa--UgCCGGGCCGUGu -3'
miRNA:   3'- -AGGCCG-GCGGcggAgGGCUCGGCACc -5'
26301 5' -65.7 NC_005345.2 + 6666 0.67 0.225374
Target:  5'- cCCGGaaGCCuugccuguGCCUCgCCGAGCaCGgcgagGGg -3'
miRNA:   3'- aGGCCggCGG--------CGGAG-GGCUCG-GCa----CC- -5'
26301 5' -65.7 NC_005345.2 + 41505 0.67 0.219919
Target:  5'- gCCGcucuGCCGCaCGCCUCgauguuCUGGGCCG-GGu -3'
miRNA:   3'- aGGC----CGGCG-GCGGAG------GGCUCGGCaCC- -5'
26301 5' -65.7 NC_005345.2 + 42646 0.67 0.2167
Target:  5'- gUCCGGCCcgggGUUccguuguuucuggagGCCUCCCGuGCCugaccuGUGGa -3'
miRNA:   3'- -AGGCCGG----CGG---------------CGGAGGGCuCGG------CACC- -5'
26301 5' -65.7 NC_005345.2 + 1336 0.67 0.214576
Target:  5'- gCCGGCCGggucgcgguaaCgCGCCUgCCaCGAGCCGg-- -3'
miRNA:   3'- aGGCCGGC-----------G-GCGGA-GG-GCUCGGCacc -5'
26301 5' -65.7 NC_005345.2 + 34526 0.67 0.214576
Target:  5'- gCgGGCCGCgGCCUCgCGGG-CGUa- -3'
miRNA:   3'- aGgCCGGCGgCGGAGgGCUCgGCAcc -5'
26301 5' -65.7 NC_005345.2 + 14402 0.67 0.214576
Target:  5'- aUCCGGCUGCacgucgccgaCGCCUgCCGGGCgauCGaGGu -3'
miRNA:   3'- -AGGCCGGCG----------GCGGAgGGCUCG---GCaCC- -5'
26301 5' -65.7 NC_005345.2 + 16127 0.67 0.214576
Target:  5'- gCCGGCCgGCgGCgUCCCG-GCgGUa- -3'
miRNA:   3'- aGGCCGG-CGgCGgAGGGCuCGgCAcc -5'
26301 5' -65.7 NC_005345.2 + 42450 0.67 0.204225
Target:  5'- gCCGGCUGCUcguGCCacCCCucGCCGUGc -3'
miRNA:   3'- aGGCCGGCGG---CGGa-GGGcuCGGCACc -5'
26301 5' -65.7 NC_005345.2 + 10954 0.67 0.199214
Target:  5'- uUCCcGCCGCCGCCcuacgCCCGu-CCGgacGGg -3'
miRNA:   3'- -AGGcCGGCGGCGGa----GGGCucGGCa--CC- -5'
26301 5' -65.7 NC_005345.2 + 3088 0.67 0.199214
Target:  5'- cCCGGCCGCCugaucgaCC-CUCGGGCCccGGa -3'
miRNA:   3'- aGGCCGGCGGc------GGaGGGCUCGGcaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.