Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26302 | 3' | -55.6 | NC_005345.2 | + | 2207 | 0.66 | 0.663928 |
Target: 5'- -gCGcGAUCGcGGACUGGcuCaCCUUGUa -3' miRNA: 3'- uaGC-CUAGCaCCUGACCuuG-GGAGCG- -5' |
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26302 | 3' | -55.6 | NC_005345.2 | + | 4584 | 0.68 | 0.543242 |
Target: 5'- aGUCcGGUCGUGGAgUGcgacucGGACCCgcUCGCg -3' miRNA: 3'- -UAGcCUAGCACCUgAC------CUUGGG--AGCG- -5' |
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26302 | 3' | -55.6 | NC_005345.2 | + | 12086 | 1.1 | 0.000653 |
Target: 5'- gAUCGGAUCGUGGACUGGAACCCUCGCa -3' miRNA: 3'- -UAGCCUAGCACCUGACCUUGGGAGCG- -5' |
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26302 | 3' | -55.6 | NC_005345.2 | + | 12500 | 0.67 | 0.597714 |
Target: 5'- -gCGGAUCGaGGuuUGGuGCCCUUGg -3' miRNA: 3'- uaGCCUAGCaCCugACCuUGGGAGCg -5' |
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26302 | 3' | -55.6 | NC_005345.2 | + | 15925 | 0.66 | 0.640761 |
Target: 5'- uUCGGGgggccggcucugcUCGUGuGACUuGAGuCCCUCGUu -3' miRNA: 3'- uAGCCU-------------AGCAC-CUGAcCUU-GGGAGCG- -5' |
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26302 | 3' | -55.6 | NC_005345.2 | + | 18061 | 0.82 | 0.079052 |
Target: 5'- -gCGGGUgGUGGacaGCUGGAAuCCCUCGCg -3' miRNA: 3'- uaGCCUAgCACC---UGACCUU-GGGAGCG- -5' |
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26302 | 3' | -55.6 | NC_005345.2 | + | 26785 | 0.68 | 0.564875 |
Target: 5'- -gCGGAUCGUGG-CcGGcGCCgCgUCGCa -3' miRNA: 3'- uaGCCUAGCACCuGaCCuUGG-G-AGCG- -5' |
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26302 | 3' | -55.6 | NC_005345.2 | + | 31479 | 0.66 | 0.674919 |
Target: 5'- -aCGGAUCGagcGGAUcGGcGGCCC-CGCg -3' miRNA: 3'- uaGCCUAGCa--CCUGaCC-UUGGGaGCG- -5' |
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26302 | 3' | -55.6 | NC_005345.2 | + | 33966 | 0.66 | 0.696768 |
Target: 5'- cUCGGAUCGaGGG-UGGGGCCaugaGCa -3' miRNA: 3'- uAGCCUAGCaCCUgACCUUGGgag-CG- -5' |
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26302 | 3' | -55.6 | NC_005345.2 | + | 37172 | 0.67 | 0.630817 |
Target: 5'- gAUCGcGAgccgacccgacuugaCGUGGugcgGCUGGAuccacagccguucGCCCUCGCg -3' miRNA: 3'- -UAGC-CUa--------------GCACC----UGACCU-------------UGGGAGCG- -5' |
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26302 | 3' | -55.6 | NC_005345.2 | + | 38718 | 0.67 | 0.583437 |
Target: 5'- --gGGGUCGccggcUGGACggugguauccggggUGGcGACCCUCGCc -3' miRNA: 3'- uagCCUAGC-----ACCUG--------------ACC-UUGGGAGCG- -5' |
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26302 | 3' | -55.6 | NC_005345.2 | + | 45859 | 0.66 | 0.696768 |
Target: 5'- ---cGAUCGUGGggGCggGGAGCCCgaCGCc -3' miRNA: 3'- uagcCUAGCACC--UGa-CCUUGGGa-GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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