miRNA: 3'- gaCGGCGCa-GAGgUA-AGGGUACuAGU- -5'
miRNA: 3'- gaCGGCGCAGAGgUaaGGGUA-------CUAGU- -5'
miRNA: 3'- gACGGCGCaGaGGUAAG-GGUACua-GU- -5'
miRNA: 3'- -GACGGCGCAGAGGUAAGGGUACUAGU- -5'
Results 1 - 4 of 4 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 26302 | 5' | -53.8 | NC_005345.2 | + | 17980 | 0.66 | 0.765981 |
|
Target: 5'- -gGCCGCGgcCUCgAUcUCCCGUG-UCGa -3' miRNA: 3'- gaCGGCGCa-GAGgUA-AGGGUACuAGU- -5' |
|||||||
| 26302 | 5' | -53.8 | NC_005345.2 | + | 31526 | 0.67 | 0.711293 |
|
Target: 5'- -gGCCGCGUCUCgAcgUCCAUugcugggGGUCGa -3' miRNA: 3'- gaCGGCGCAGAGgUaaGGGUA-------CUAGU- -5' |
|||||||
| 26302 | 5' | -53.8 | NC_005345.2 | + | 40297 | 0.68 | 0.600453 |
|
Target: 5'- aUGCCGCGcCcCCGUUCaCCGUGccgCAg -3' miRNA: 3'- gACGGCGCaGaGGUAAG-GGUACua-GU- -5' |
|||||||
| 26302 | 5' | -53.8 | NC_005345.2 | + | 12120 | 1.09 | 0.001121 |
|
Target: 5'- cCUGCCGCGUCUCCAUUCCCAUGAUCAg -3' miRNA: 3'- -GACGGCGCAGAGGUAAGGGUACUAGU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home