miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26304 3' -65.5 NC_005345.2 + 47099 0.66 0.250397
Target:  5'- cGCC-GCgGCCCGCCgggccgcgcCGGGCCcgcucgacGAGGa- -3'
miRNA:   3'- -CGGaCG-CGGGCGGa--------GCCCGG--------CUCCac -5'
26304 3' -65.5 NC_005345.2 + 917 0.66 0.244366
Target:  5'- cGCCgGCGCCuCGCCaauguccaggUCGGccGCCGGGuUGa -3'
miRNA:   3'- -CGGaCGCGG-GCGG----------AGCC--CGGCUCcAC- -5'
26304 3' -65.5 NC_005345.2 + 8919 0.66 0.244366
Target:  5'- cGCCaggaucacgGCGgCCGCCcccgugggCGGGCUGcGGGUGc -3'
miRNA:   3'- -CGGa--------CGCgGGCGGa-------GCCCGGC-UCCAC- -5'
26304 3' -65.5 NC_005345.2 + 5538 0.66 0.244366
Target:  5'- gGCauggUGCGCCCcUUUCGGGUCGgugugcGGGUGg -3'
miRNA:   3'- -CGg---ACGCGGGcGGAGCCCGGC------UCCAC- -5'
26304 3' -65.5 NC_005345.2 + 30951 0.66 0.244366
Target:  5'- cGCCccacucgGCGCgCGCCUC--GCCGAcGGUGu -3'
miRNA:   3'- -CGGa------CGCGgGCGGAGccCGGCU-CCAC- -5'
26304 3' -65.5 NC_005345.2 + 12666 0.66 0.238455
Target:  5'- cGCCguugGCGuaCCCGCCgggUCGguuguaGGCCGAGGc- -3'
miRNA:   3'- -CGGa---CGC--GGGCGG---AGC------CCGGCUCCac -5'
26304 3' -65.5 NC_005345.2 + 18449 0.66 0.238455
Target:  5'- aCCUGCGCCCGUggUGGaCCG-GGUc -3'
miRNA:   3'- cGGACGCGGGCGgaGCCcGGCuCCAc -5'
26304 3' -65.5 NC_005345.2 + 34819 0.66 0.232665
Target:  5'- cGCCgUGCGCCUGCCcCucGCCGAcGUGc -3'
miRNA:   3'- -CGG-ACGCGGGCGGaGccCGGCUcCAC- -5'
26304 3' -65.5 NC_005345.2 + 16199 0.66 0.22144
Target:  5'- gGCCgGCGUCCGCCUCGcGCuCGAc--- -3'
miRNA:   3'- -CGGaCGCGGGCGGAGCcCG-GCUccac -5'
26304 3' -65.5 NC_005345.2 + 29058 0.66 0.22144
Target:  5'- cCUUGUGCgaacuaCUGCCUCGGugugcCCGGGGUGg -3'
miRNA:   3'- cGGACGCG------GGCGGAGCCc----GGCUCCAC- -5'
26304 3' -65.5 NC_005345.2 + 23358 0.67 0.216002
Target:  5'- -gCUGCGCUgGgagCGGGCCGAGGc- -3'
miRNA:   3'- cgGACGCGGgCggaGCCCGGCUCCac -5'
26304 3' -65.5 NC_005345.2 + 9958 0.67 0.216002
Target:  5'- aCCcGCgGCCCgGgUUCGGGCUGGGGUc -3'
miRNA:   3'- cGGaCG-CGGG-CgGAGCCCGGCUCCAc -5'
26304 3' -65.5 NC_005345.2 + 21358 0.67 0.216002
Target:  5'- gGCUUGCGCCacaucacgGCCUgCaGGCCGgugcgcGGGUGa -3'
miRNA:   3'- -CGGACGCGGg-------CGGA-GcCCGGC------UCCAC- -5'
26304 3' -65.5 NC_005345.2 + 19035 0.67 0.215464
Target:  5'- gGCC-GCuGCuCCGCCUCGccgcccuGGCCGuGGUc -3'
miRNA:   3'- -CGGaCG-CG-GGCGGAGC-------CCGGCuCCAc -5'
26304 3' -65.5 NC_005345.2 + 13624 0.67 0.212795
Target:  5'- aGCUUcGCGCCgGCCUugaucuugucgaacaCGGGCuUGAGGg- -3'
miRNA:   3'- -CGGA-CGCGGgCGGA---------------GCCCG-GCUCCac -5'
26304 3' -65.5 NC_005345.2 + 20399 0.67 0.205469
Target:  5'- aCCgcggGCGCCUGCa--GGGCCGAGu-- -3'
miRNA:   3'- cGGa---CGCGGGCGgagCCCGGCUCcac -5'
26304 3' -65.5 NC_005345.2 + 43496 0.67 0.200372
Target:  5'- gGUCcGgGCCCGCCgggCGGuGCCGAucgGGUc -3'
miRNA:   3'- -CGGaCgCGGGCGGa--GCC-CGGCU---CCAc -5'
26304 3' -65.5 NC_005345.2 + 45455 0.67 0.200372
Target:  5'- cGCCgGCGgCCGagaCggcGGCCGGGGUGg -3'
miRNA:   3'- -CGGaCGCgGGCg--GagcCCGGCUCCAC- -5'
26304 3' -65.5 NC_005345.2 + 24621 0.67 0.200372
Target:  5'- uGCgUGCuGCacgauCCGCCgugCGGGCCGGGuUGg -3'
miRNA:   3'- -CGgACG-CG-----GGCGGa--GCCCGGCUCcAC- -5'
26304 3' -65.5 NC_005345.2 + 16252 0.67 0.195384
Target:  5'- gGCCcgcaGCGCCCccaGCCUgCGGGCCGGu--- -3'
miRNA:   3'- -CGGa---CGCGGG---CGGA-GCCCGGCUccac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.