miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26304 3' -65.5 NC_005345.2 + 11587 1.08 0.00011
Target:  5'- cGCCUGCGCCCGCCUCGGGCCGAGGUGc -3'
miRNA:   3'- -CGGACGCGGGCGGAGCCCGGCUCCAC- -5'
26304 3' -65.5 NC_005345.2 + 18779 0.83 0.011509
Target:  5'- aCCUGCGCCCGCCgCGGGCUGccgucgggcaGGGUGa -3'
miRNA:   3'- cGGACGCGGGCGGaGCCCGGC----------UCCAC- -5'
26304 3' -65.5 NC_005345.2 + 30153 0.73 0.066121
Target:  5'- cGCC-GC-CCCG-CUCGGGCCGAGGc- -3'
miRNA:   3'- -CGGaCGcGGGCgGAGCCCGGCUCCac -5'
26304 3' -65.5 NC_005345.2 + 5604 0.73 0.067947
Target:  5'- uGCCgugggGCGCCgGgCUCGuGGCCGAcgcGGUGa -3'
miRNA:   3'- -CGGa----CGCGGgCgGAGC-CCGGCU---CCAC- -5'
26304 3' -65.5 NC_005345.2 + 15464 0.71 0.093987
Target:  5'- aGCCgcuuCGCCUGCUUCGGGUCGAGc-- -3'
miRNA:   3'- -CGGac--GCGGGCGGAGCCCGGCUCcac -5'
26304 3' -65.5 NC_005345.2 + 25399 0.71 0.093987
Target:  5'- cGCCgGC-CUCGCCgUCGaGGCCGAGGa- -3'
miRNA:   3'- -CGGaCGcGGGCGG-AGC-CCGGCUCCac -5'
26304 3' -65.5 NC_005345.2 + 26623 0.71 0.093987
Target:  5'- gGCCggUGUGCCCGaggaCUacacCGaGGCCGAGGUGc -3'
miRNA:   3'- -CGG--ACGCGGGCg---GA----GC-CCGGCUCCAC- -5'
26304 3' -65.5 NC_005345.2 + 32966 0.71 0.096541
Target:  5'- cGCCggccGCGUCCGCguagucCUCGgcgcaggcGGCCGGGGUGg -3'
miRNA:   3'- -CGGa---CGCGGGCG------GAGC--------CCGGCUCCAC- -5'
26304 3' -65.5 NC_005345.2 + 17474 0.71 0.096541
Target:  5'- gGgCUGCGCCUGUCUCGGcGUCGGGa-- -3'
miRNA:   3'- -CgGACGCGGGCGGAGCC-CGGCUCcac -5'
26304 3' -65.5 NC_005345.2 + 28554 0.71 0.096541
Target:  5'- uGCgaGCGCCCGCCggccccggauUUGGGCCcGGGa- -3'
miRNA:   3'- -CGgaCGCGGGCGG----------AGCCCGGcUCCac -5'
26304 3' -65.5 NC_005345.2 + 3748 0.71 0.104324
Target:  5'- cGCCUGUcggacugGCuCCGCUggacGGCCGAGGUGa -3'
miRNA:   3'- -CGGACG-------CG-GGCGGagc-CCGGCUCCAC- -5'
26304 3' -65.5 NC_005345.2 + 36506 0.7 0.110324
Target:  5'- aGCCagUGCGCCCGCUcCGaGGCCc-GGUGc -3'
miRNA:   3'- -CGG--ACGCGGGCGGaGC-CCGGcuCCAC- -5'
26304 3' -65.5 NC_005345.2 + 6677 0.7 0.116338
Target:  5'- uGCCUGUGCCuCGCCgagcacGGCgaGGGGUGg -3'
miRNA:   3'- -CGGACGCGG-GCGGagc---CCGg-CUCCAC- -5'
26304 3' -65.5 NC_005345.2 + 4347 0.7 0.116338
Target:  5'- aGCCgGgGuCCUGCCUCGGGCgGGcgggccgcucGGUGg -3'
miRNA:   3'- -CGGaCgC-GGGCGGAGCCCGgCU----------CCAC- -5'
26304 3' -65.5 NC_005345.2 + 3242 0.7 0.116338
Target:  5'- cGCaCUGUGCaCGCggcgCUCGGuGCCGAGGUa -3'
miRNA:   3'- -CG-GACGCGgGCG----GAGCC-CGGCUCCAc -5'
26304 3' -65.5 NC_005345.2 + 10075 0.7 0.116338
Target:  5'- cGCCgucgagGCGCUCGUCaucCGGGCCGAGcGg- -3'
miRNA:   3'- -CGGa-----CGCGGGCGGa--GCCCGGCUC-Cac -5'
26304 3' -65.5 NC_005345.2 + 17188 0.7 0.128952
Target:  5'- aGUCgGCGCCUucccacaGCCUCGGGuuGucGGUGu -3'
miRNA:   3'- -CGGaCGCGGG-------CGGAGCCCggCu-CCAC- -5'
26304 3' -65.5 NC_005345.2 + 18335 0.69 0.139869
Target:  5'- cGCCgcgaCGUCgGCC-CGGGUCGAGGUc -3'
miRNA:   3'- -CGGac--GCGGgCGGaGCCCGGCUCCAc -5'
26304 3' -65.5 NC_005345.2 + 31128 0.68 0.163012
Target:  5'- uCCUGCGCUCGCC-CGgcguccgacaggcGGUCGAGGc- -3'
miRNA:   3'- cGGACGCGGGCGGaGC-------------CCGGCUCCac -5'
26304 3' -65.5 NC_005345.2 + 2559 0.68 0.176508
Target:  5'- gGCgaGUGCCCGgucgacgugCUCgGGGCCGAGGcUGa -3'
miRNA:   3'- -CGgaCGCGGGCg--------GAG-CCCGGCUCC-AC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.