miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26304 5' -58.2 NC_005345.2 + 9030 0.65 0.496742
Target:  5'- gAUCAgAGCCgGgucggcgugugacaCCGAGCAGGCGcGGc -3'
miRNA:   3'- -UAGUgUCGGgC--------------GGCUCGUCCGUaUCu -5'
26304 5' -58.2 NC_005345.2 + 11315 0.66 0.489469
Target:  5'- gAUCAaGGCCCGCCGuG-AGGCGa--- -3'
miRNA:   3'- -UAGUgUCGGGCGGCuCgUCCGUaucu -5'
26304 5' -58.2 NC_005345.2 + 40770 0.66 0.489469
Target:  5'- cGUCGggcCGGUCgGCCGGcGCGGGCGUGu- -3'
miRNA:   3'- -UAGU---GUCGGgCGGCU-CGUCCGUAUcu -5'
26304 5' -58.2 NC_005345.2 + 11189 0.66 0.488434
Target:  5'- -cCGCAGCCuggucgaCGCCGgccuguGGCacGGGCAUGGGc -3'
miRNA:   3'- uaGUGUCGG-------GCGGC------UCG--UCCGUAUCU- -5'
26304 5' -58.2 NC_005345.2 + 3490 0.66 0.479167
Target:  5'- -gCACuGCCCgGUCGucGCAGGCGaGGAc -3'
miRNA:   3'- uaGUGuCGGG-CGGCu-CGUCCGUaUCU- -5'
26304 5' -58.2 NC_005345.2 + 40472 0.66 0.45889
Target:  5'- cGUCACGGCcaCCGCCGcggcgagcagcAGCAcGGCGaggUAGGg -3'
miRNA:   3'- -UAGUGUCG--GGCGGC-----------UCGU-CCGU---AUCU- -5'
26304 5' -58.2 NC_005345.2 + 31607 0.66 0.45889
Target:  5'- -gCGCGGCCCGCgGAucGCAuGGCGa--- -3'
miRNA:   3'- uaGUGUCGGGCGgCU--CGU-CCGUaucu -5'
26304 5' -58.2 NC_005345.2 + 40215 0.66 0.45889
Target:  5'- -cCGCAGCCCGCCcacGgGGGCGg--- -3'
miRNA:   3'- uaGUGUCGGGCGGcu-CgUCCGUaucu -5'
26304 5' -58.2 NC_005345.2 + 30069 0.66 0.457888
Target:  5'- -gCACGGCCCGCaCGAucgcguagaccccGUAGGCGa--- -3'
miRNA:   3'- uaGUGUCGGGCG-GCU-------------CGUCCGUaucu -5'
26304 5' -58.2 NC_005345.2 + 41565 0.66 0.448924
Target:  5'- -gCGCGcGCUCGCCGugcucGCGGGCGUGc- -3'
miRNA:   3'- uaGUGU-CGGGCGGCu----CGUCCGUAUcu -5'
26304 5' -58.2 NC_005345.2 + 6675 0.67 0.439079
Target:  5'- cUUGCcuguGCCuCGCCGAGCAcGGCGaGGGg -3'
miRNA:   3'- uAGUGu---CGG-GCGGCUCGU-CCGUaUCU- -5'
26304 5' -58.2 NC_005345.2 + 30013 0.67 0.439079
Target:  5'- cGUCcCGGCCgagguCGCCGAGCGGaucggcgcccacGCGUGGGc -3'
miRNA:   3'- -UAGuGUCGG-----GCGGCUCGUC------------CGUAUCU- -5'
26304 5' -58.2 NC_005345.2 + 3621 0.67 0.429358
Target:  5'- -cCACGGCCCGCgccGCAGGUGUGc- -3'
miRNA:   3'- uaGUGUCGGGCGgcuCGUCCGUAUcu -5'
26304 5' -58.2 NC_005345.2 + 2051 0.67 0.429358
Target:  5'- -gCGCGGCCCGgCGGGCcgcGGCGa--- -3'
miRNA:   3'- uaGUGUCGGGCgGCUCGu--CCGUaucu -5'
26304 5' -58.2 NC_005345.2 + 37905 0.67 0.419765
Target:  5'- cGUCACGGCCggaGUCGAGuCAGcGCGUucgcGGAc -3'
miRNA:   3'- -UAGUGUCGGg--CGGCUC-GUC-CGUA----UCU- -5'
26304 5' -58.2 NC_005345.2 + 7340 0.67 0.419765
Target:  5'- aGUCGCacgcgguguGGCCCgcgguggcgcaGCCGGGCGGGgGUGGc -3'
miRNA:   3'- -UAGUG---------UCGGG-----------CGGCUCGUCCgUAUCu -5'
26304 5' -58.2 NC_005345.2 + 24629 0.67 0.419765
Target:  5'- -gCACGaUCCGCCGuGCGGGCcgGGu -3'
miRNA:   3'- uaGUGUcGGGCGGCuCGUCCGuaUCu -5'
26304 5' -58.2 NC_005345.2 + 7690 0.67 0.418813
Target:  5'- -gCGCAGCCCGCCGguaccgaAGguGGUg---- -3'
miRNA:   3'- uaGUGUCGGGCGGC-------UCguCCGuaucu -5'
26304 5' -58.2 NC_005345.2 + 9808 0.67 0.410304
Target:  5'- -gCACGGCCaCGCCGAGgGGuGCcucAUAGu -3'
miRNA:   3'- uaGUGUCGG-GCGGCUCgUC-CG---UAUCu -5'
26304 5' -58.2 NC_005345.2 + 27641 0.67 0.410303
Target:  5'- cUCGCGGUCCGCCGAcagaacuucaCGGGCccGGAc -3'
miRNA:   3'- uAGUGUCGGGCGGCUc---------GUCCGuaUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.