miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26304 5' -58.2 NC_005345.2 + 11624 1.06 0.000528
Target:  5'- gAUCACAGCCCGCCGAGCAGGCAUAGAc -3'
miRNA:   3'- -UAGUGUCGGGCGGCUCGUCCGUAUCU- -5'
26304 5' -58.2 NC_005345.2 + 30253 0.81 0.042267
Target:  5'- gAUCGCGG-CCGCCGAGCAGGCcgGGc -3'
miRNA:   3'- -UAGUGUCgGGCGGCUCGUCCGuaUCu -5'
26304 5' -58.2 NC_005345.2 + 23674 0.8 0.055082
Target:  5'- gGUCGCGGCCgGUCGGGCGGGCcgAGc -3'
miRNA:   3'- -UAGUGUCGGgCGGCUCGUCCGuaUCu -5'
26304 5' -58.2 NC_005345.2 + 12457 0.76 0.095618
Target:  5'- -gCGCAGCUCGCgGGGCAGGCG-AGGc -3'
miRNA:   3'- uaGUGUCGGGCGgCUCGUCCGUaUCU- -5'
26304 5' -58.2 NC_005345.2 + 12532 0.76 0.110296
Target:  5'- -gCGCAGCUCGCgGAGCGGGCGcAGc -3'
miRNA:   3'- uaGUGUCGGGCGgCUCGUCCGUaUCu -5'
26304 5' -58.2 NC_005345.2 + 24763 0.75 0.127063
Target:  5'- uGUCGCAGCCCGaaGuGCGGGCGUc-- -3'
miRNA:   3'- -UAGUGUCGGGCggCuCGUCCGUAucu -5'
26304 5' -58.2 NC_005345.2 + 38181 0.74 0.142145
Target:  5'- --aGCuGCCCGuCCGGGaCGGGCGUAGGg -3'
miRNA:   3'- uagUGuCGGGC-GGCUC-GUCCGUAUCU- -5'
26304 5' -58.2 NC_005345.2 + 47101 0.73 0.167849
Target:  5'- -cCGCGGCCCGCCGGGCcGcGCcgGGc -3'
miRNA:   3'- uaGUGUCGGGCGGCUCGuC-CGuaUCu -5'
26304 5' -58.2 NC_005345.2 + 8065 0.71 0.214203
Target:  5'- gAUCA-AGCucgCCGCCGAGCAGGCGgccGGGc -3'
miRNA:   3'- -UAGUgUCG---GGCGGCUCGUCCGUa--UCU- -5'
26304 5' -58.2 NC_005345.2 + 4144 0.71 0.219983
Target:  5'- cUCGCGGCgCuCGUCGAGCGGGUGUcGAc -3'
miRNA:   3'- uAGUGUCG-G-GCGGCUCGUCCGUAuCU- -5'
26304 5' -58.2 NC_005345.2 + 14208 0.71 0.238125
Target:  5'- --aGguGUCCGCCGAGCAGGCc---- -3'
miRNA:   3'- uagUguCGGGCGGCUCGUCCGuaucu -5'
26304 5' -58.2 NC_005345.2 + 8424 0.71 0.238125
Target:  5'- -gCGCGGCUggaCGCCGAGCGgucGGUGUGGAc -3'
miRNA:   3'- uaGUGUCGG---GCGGCUCGU---CCGUAUCU- -5'
26304 5' -58.2 NC_005345.2 + 47910 0.71 0.244445
Target:  5'- -cCGCAGCCCGCCGGaaAGcCAUGGGa -3'
miRNA:   3'- uaGUGUCGGGCGGCUcgUCcGUAUCU- -5'
26304 5' -58.2 NC_005345.2 + 21369 0.7 0.269736
Target:  5'- cAUCACGGCCUGCaggccggugcgcgggUGAcggggcagagugcguGCAGGCAUGGGu -3'
miRNA:   3'- -UAGUGUCGGGCG---------------GCU---------------CGUCCGUAUCU- -5'
26304 5' -58.2 NC_005345.2 + 32186 0.69 0.292634
Target:  5'- --gGCAGCCgGCCGAggugccGCAGGCGUc-- -3'
miRNA:   3'- uagUGUCGGgCGGCU------CGUCCGUAucu -5'
26304 5' -58.2 NC_005345.2 + 3648 0.69 0.307702
Target:  5'- -cCGCAGCCCGgCG-GCAgcGGCcgGGAu -3'
miRNA:   3'- uaGUGUCGGGCgGCuCGU--CCGuaUCU- -5'
26304 5' -58.2 NC_005345.2 + 30372 0.69 0.315455
Target:  5'- --gGCAGCCCGC--GGCGGGCGcAGGu -3'
miRNA:   3'- uagUGUCGGGCGgcUCGUCCGUaUCU- -5'
26304 5' -58.2 NC_005345.2 + 43496 0.69 0.315455
Target:  5'- gGUCcgGGCCCGCCGGGCGGuGCcgAu- -3'
miRNA:   3'- -UAGugUCGGGCGGCUCGUC-CGuaUcu -5'
26304 5' -58.2 NC_005345.2 + 34311 0.69 0.328972
Target:  5'- aGUCGCAGCUCGCCGucgcccuguucggcAcGCAGGCcgaAGAc -3'
miRNA:   3'- -UAGUGUCGGGCGGC--------------U-CGUCCGua-UCU- -5'
26304 5' -58.2 NC_005345.2 + 13064 0.68 0.339594
Target:  5'- uGUCuuuCAGCCCGCCGAGCAucuuccCcgGGAc -3'
miRNA:   3'- -UAGu--GUCGGGCGGCUCGUcc----GuaUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.