miRNA display CGI


Results 21 - 40 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26304 5' -58.2 NC_005345.2 + 26346 0.67 0.410303
Target:  5'- cGUCGCcGUCCGCgGuGUGGGCGUcGGAg -3'
miRNA:   3'- -UAGUGuCGGGCGgCuCGUCCGUA-UCU- -5'
26304 5' -58.2 NC_005345.2 + 25597 0.67 0.400975
Target:  5'- --uGCuGCCgaagaaCGCCGAGCAGGCGUu-- -3'
miRNA:   3'- uagUGuCGG------GCGGCUCGUCCGUAucu -5'
26304 5' -58.2 NC_005345.2 + 13316 0.67 0.400975
Target:  5'- -cCAguGCCCcgaaccccaCCGAGCGGGCcgAGGa -3'
miRNA:   3'- uaGUguCGGGc--------GGCUCGUCCGuaUCU- -5'
26304 5' -58.2 NC_005345.2 + 38057 0.67 0.399126
Target:  5'- gAUCGCGGUggcggggauugcgCCGCCGGGCgccacgcAGGCGcAGAu -3'
miRNA:   3'- -UAGUGUCG-------------GGCGGCUCG-------UCCGUaUCU- -5'
26304 5' -58.2 NC_005345.2 + 10786 0.68 0.38273
Target:  5'- --gACAGCCgCGCUGcGGCAGGCGg--- -3'
miRNA:   3'- uagUGUCGG-GCGGC-UCGUCCGUaucu -5'
26304 5' -58.2 NC_005345.2 + 45693 0.68 0.38273
Target:  5'- uGUCcgACAGCCCGCgCGAGCucgGGGCc---- -3'
miRNA:   3'- -UAG--UGUCGGGCG-GCUCG---UCCGuaucu -5'
26304 5' -58.2 NC_005345.2 + 17554 0.68 0.38273
Target:  5'- -cCGCgGGCCgCGCCGAGCAGGg----- -3'
miRNA:   3'- uaGUG-UCGG-GCGGCUCGUCCguaucu -5'
26304 5' -58.2 NC_005345.2 + 31308 0.68 0.373817
Target:  5'- uGUCGCcggGGCCCggcgGCCGGGCGGGaagGGGc -3'
miRNA:   3'- -UAGUG---UCGGG----CGGCUCGUCCguaUCU- -5'
26304 5' -58.2 NC_005345.2 + 31546 0.68 0.373817
Target:  5'- cAUCACAGCCCcuuggGCCGcgGGCAgauGGCGgcGAu -3'
miRNA:   3'- -UAGUGUCGGG-----CGGC--UCGU---CCGUauCU- -5'
26304 5' -58.2 NC_005345.2 + 39429 0.68 0.365045
Target:  5'- gGUCGCGGCCCGCgCG-GCGcGGCu---- -3'
miRNA:   3'- -UAGUGUCGGGCG-GCuCGU-CCGuaucu -5'
26304 5' -58.2 NC_005345.2 + 48336 0.68 0.365045
Target:  5'- uGUgACGGCCCccgGgCGAGCAGGUGUAa- -3'
miRNA:   3'- -UAgUGUCGGG---CgGCUCGUCCGUAUcu -5'
26304 5' -58.2 NC_005345.2 + 6463 0.68 0.365045
Target:  5'- cAUCgaGCGGgCCGCCGAGCuguacGGCGgcGAg -3'
miRNA:   3'- -UAG--UGUCgGGCGGCUCGu----CCGUauCU- -5'
26304 5' -58.2 NC_005345.2 + 40097 0.68 0.365045
Target:  5'- aGUCGCGGaCCUGCaCGAGCcGGCGg--- -3'
miRNA:   3'- -UAGUGUC-GGGCG-GCUCGuCCGUaucu -5'
26304 5' -58.2 NC_005345.2 + 1682 0.68 0.356417
Target:  5'- -gUACGGCCggaaGuuGAGCGGGUcgAGAg -3'
miRNA:   3'- uaGUGUCGGg---CggCUCGUCCGuaUCU- -5'
26304 5' -58.2 NC_005345.2 + 8925 0.68 0.347933
Target:  5'- gAUCACGGCggCCGCCcccguGGGCGGGCugcGGGu -3'
miRNA:   3'- -UAGUGUCG--GGCGG-----CUCGUCCGua-UCU- -5'
26304 5' -58.2 NC_005345.2 + 46421 0.68 0.347933
Target:  5'- -cCGCuGUcaUCGCCGGGCGGGCGggAGAc -3'
miRNA:   3'- uaGUGuCG--GGCGGCUCGUCCGUa-UCU- -5'
26304 5' -58.2 NC_005345.2 + 32992 0.68 0.339594
Target:  5'- -gCGCAGgCgGCCGGGguGGCGgGGGc -3'
miRNA:   3'- uaGUGUCgGgCGGCUCguCCGUaUCU- -5'
26304 5' -58.2 NC_005345.2 + 13064 0.68 0.339594
Target:  5'- uGUCuuuCAGCCCGCCGAGCAucuuccCcgGGAc -3'
miRNA:   3'- -UAGu--GUCGGGCGGCUCGUcc----GuaUCU- -5'
26304 5' -58.2 NC_005345.2 + 34311 0.69 0.328972
Target:  5'- aGUCGCAGCUCGCCGucgcccuguucggcAcGCAGGCcgaAGAc -3'
miRNA:   3'- -UAGUGUCGGGCGGC--------------U-CGUCCGua-UCU- -5'
26304 5' -58.2 NC_005345.2 + 43496 0.69 0.315455
Target:  5'- gGUCcgGGCCCGCCGGGCGGuGCcgAu- -3'
miRNA:   3'- -UAGugUCGGGCGGCUCGUC-CGuaUcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.