miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26305 3' -52.9 NC_005345.2 + 9702 0.66 0.832816
Target:  5'- aUCAgCGGgccGCCGCGUGA-GCCGcGCc -3'
miRNA:   3'- -GGUgGUCac-UGGUGCACUaCGGUuCG- -5'
26305 3' -52.9 NC_005345.2 + 42312 0.66 0.831902
Target:  5'- gCCGCgAG-GACCAUGUcGAUcccgcccGCCAuGGCg -3'
miRNA:   3'- -GGUGgUCaCUGGUGCA-CUA-------CGGU-UCG- -5'
26305 3' -52.9 NC_005345.2 + 14190 0.66 0.823583
Target:  5'- aCgACCAGgacGCCGCcgagGUGuccGCCGAGCa -3'
miRNA:   3'- -GgUGGUCac-UGGUG----CACua-CGGUUCG- -5'
26305 3' -52.9 NC_005345.2 + 7344 0.66 0.823583
Target:  5'- gCACgCGGUGuggcCCGCgGUGGcgcaGCCGGGCg -3'
miRNA:   3'- gGUG-GUCACu---GGUG-CACUa---CGGUUCG- -5'
26305 3' -52.9 NC_005345.2 + 9304 0.66 0.823583
Target:  5'- cCUGCCAGgugcGGCCGgccgagccCGcGAUGCCGAGg -3'
miRNA:   3'- -GGUGGUCa---CUGGU--------GCaCUACGGUUCg -5'
26305 3' -52.9 NC_005345.2 + 37704 0.66 0.822648
Target:  5'- gCCGCCAGUccugcggGAUCGCGcUGcgGCgcGGCg -3'
miRNA:   3'- -GGUGGUCA-------CUGGUGC-ACuaCGguUCG- -5'
26305 3' -52.9 NC_005345.2 + 36128 0.66 0.81414
Target:  5'- gUCGCCgcAGUGggcacaccGCCAcCGUGcgGCCGgcAGCg -3'
miRNA:   3'- -GGUGG--UCAC--------UGGU-GCACuaCGGU--UCG- -5'
26305 3' -52.9 NC_005345.2 + 41581 0.66 0.81414
Target:  5'- cUCGCgGGcGugCucgguCGUGAUGCCGuGCa -3'
miRNA:   3'- -GGUGgUCaCugGu----GCACUACGGUuCG- -5'
26305 3' -52.9 NC_005345.2 + 6182 0.66 0.804499
Target:  5'- cCCGgcCCGGUucGugCGCGUGccGCCcGGCc -3'
miRNA:   3'- -GGU--GGUCA--CugGUGCACuaCGGuUCG- -5'
26305 3' -52.9 NC_005345.2 + 15813 0.66 0.79467
Target:  5'- aCGCCGGcuacgccgcGACCGCGUGGagauggGCgCGGGCc -3'
miRNA:   3'- gGUGGUCa--------CUGGUGCACUa-----CG-GUUCG- -5'
26305 3' -52.9 NC_005345.2 + 30926 0.66 0.79467
Target:  5'- aCCGCCGGcGGCCGCucacGGUGCacGGCc -3'
miRNA:   3'- -GGUGGUCaCUGGUGca--CUACGguUCG- -5'
26305 3' -52.9 NC_005345.2 + 42684 0.67 0.784664
Target:  5'- -uGCC--UGACC-UGUgGAUGCCGGGCg -3'
miRNA:   3'- ggUGGucACUGGuGCA-CUACGGUUCG- -5'
26305 3' -52.9 NC_005345.2 + 28431 0.67 0.784664
Target:  5'- gUCGCCgAG-GGCCGCGaGAUGUaccgCGAGCu -3'
miRNA:   3'- -GGUGG-UCaCUGGUGCaCUACG----GUUCG- -5'
26305 3' -52.9 NC_005345.2 + 5929 0.67 0.784664
Target:  5'- -gACCGGUGACC-UGUGG-GUguGGCu -3'
miRNA:   3'- ggUGGUCACUGGuGCACUaCGguUCG- -5'
26305 3' -52.9 NC_005345.2 + 10596 0.67 0.784664
Target:  5'- -uGCCGGUGGgCGCGUac-GCCGAGa -3'
miRNA:   3'- ggUGGUCACUgGUGCAcuaCGGUUCg -5'
26305 3' -52.9 NC_005345.2 + 43912 0.67 0.78163
Target:  5'- gCCACCGuGUaccgcgggcaccccGACgGCGUGuagcGCCGGGCc -3'
miRNA:   3'- -GGUGGU-CA--------------CUGgUGCACua--CGGUUCG- -5'
26305 3' -52.9 NC_005345.2 + 36521 0.67 0.774494
Target:  5'- uCCGaggcCCGGUGcCCGagcCGUGcccgGCCGAGCg -3'
miRNA:   3'- -GGU----GGUCACuGGU---GCACua--CGGUUCG- -5'
26305 3' -52.9 NC_005345.2 + 9147 0.67 0.76417
Target:  5'- uCgGCCGGguUGACgGCGcgGGUGCaCGGGCc -3'
miRNA:   3'- -GgUGGUC--ACUGgUGCa-CUACG-GUUCG- -5'
26305 3' -52.9 NC_005345.2 + 15878 0.67 0.753706
Target:  5'- gCGCUuGUGAUCuucuuccgGCGUGccAUGCCGGGCc -3'
miRNA:   3'- gGUGGuCACUGG--------UGCAC--UACGGUUCG- -5'
26305 3' -52.9 NC_005345.2 + 30703 0.67 0.753706
Target:  5'- gCUGCgGGUGGCCGCGgUGAUcGgCGAGg -3'
miRNA:   3'- -GGUGgUCACUGGUGC-ACUA-CgGUUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.