miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26305 5' -58.8 NC_005345.2 + 25274 0.66 0.551625
Target:  5'- cCUGCGUCGGaaugaagggcucGCCgucgucccgGCCGGGcugggcaagguUCUCGAUCa -3'
miRNA:   3'- -GGCGCAGCU------------CGG---------UGGCCU-----------AGGGCUAG- -5'
26305 5' -58.8 NC_005345.2 + 36284 0.66 0.551625
Target:  5'- cCCgGCGgCGAGCCACCcccacGAcgUCaCCGGUCc -3'
miRNA:   3'- -GG-CGCaGCUCGGUGGc----CU--AG-GGCUAG- -5'
26305 5' -58.8 NC_005345.2 + 35563 0.66 0.551625
Target:  5'- gCGgGUCGAGCCACaC-GAUCUUcGUCg -3'
miRNA:   3'- gGCgCAGCUCGGUG-GcCUAGGGcUAG- -5'
26305 5' -58.8 NC_005345.2 + 4365 0.66 0.551625
Target:  5'- -gGCGggCGGGCCGCUcgguggGGGUgUCGGUCa -3'
miRNA:   3'- ggCGCa-GCUCGGUGG------CCUAgGGCUAG- -5'
26305 5' -58.8 NC_005345.2 + 15642 0.66 0.551625
Target:  5'- aCCG-GUCgGGGCCgcaaugcgACCGGG-CCCGGUg -3'
miRNA:   3'- -GGCgCAG-CUCGG--------UGGCCUaGGGCUAg -5'
26305 5' -58.8 NC_005345.2 + 33319 0.66 0.550582
Target:  5'- gCGCGguguagcUCGGGCCgucgGCCGGAgUCgCCGAg- -3'
miRNA:   3'- gGCGC-------AGCUCGG----UGGCCU-AG-GGCUag -5'
26305 5' -58.8 NC_005345.2 + 18695 0.66 0.541216
Target:  5'- gCGCGcagCGuGCCcggAUCGGGggugugCCCGGUCg -3'
miRNA:   3'- gGCGCa--GCuCGG---UGGCCUa-----GGGCUAG- -5'
26305 5' -58.8 NC_005345.2 + 9727 0.66 0.541216
Target:  5'- gCCGCG-CGGGCCgcgACCGcgccGAcgcUCCCGggCa -3'
miRNA:   3'- -GGCGCaGCUCGG---UGGC----CU---AGGGCuaG- -5'
26305 5' -58.8 NC_005345.2 + 34358 0.66 0.540178
Target:  5'- cUCGaCGUCGaAGCgCACCGGGgcgUugcagucgacgagCCCGGUCg -3'
miRNA:   3'- -GGC-GCAGC-UCG-GUGGCCU---A-------------GGGCUAG- -5'
26305 5' -58.8 NC_005345.2 + 15628 0.66 0.530872
Target:  5'- gCCGCGgcUCGccGCCugcCCGGAcugcUCgCCGAUCu -3'
miRNA:   3'- -GGCGC--AGCu-CGGu--GGCCU----AG-GGCUAG- -5'
26305 5' -58.8 NC_005345.2 + 35458 0.66 0.530872
Target:  5'- cCCGUGUUcacAGCCAUCGGAgcggCCGGUa -3'
miRNA:   3'- -GGCGCAGc--UCGGUGGCCUag--GGCUAg -5'
26305 5' -58.8 NC_005345.2 + 31321 0.66 0.528812
Target:  5'- gCGCGgucuggaGGGCgGCCGGAcgugaccaugccCCCGAUCc -3'
miRNA:   3'- gGCGCag-----CUCGgUGGCCUa-----------GGGCUAG- -5'
26305 5' -58.8 NC_005345.2 + 2424 0.66 0.527783
Target:  5'- -aGCG-CGuGCCACuCGGAgacucucgaacgcgUCCCGGUg -3'
miRNA:   3'- ggCGCaGCuCGGUG-GCCU--------------AGGGCUAg -5'
26305 5' -58.8 NC_005345.2 + 9675 0.66 0.520602
Target:  5'- aCCGCGa-GcGCCGCCGGcugcaggCCGAUCa -3'
miRNA:   3'- -GGCGCagCuCGGUGGCCuag----GGCUAG- -5'
26305 5' -58.8 NC_005345.2 + 6203 0.66 0.520602
Target:  5'- uCCGCGgCGcccuGGCCACC---UCCCGAUa -3'
miRNA:   3'- -GGCGCaGC----UCGGUGGccuAGGGCUAg -5'
26305 5' -58.8 NC_005345.2 + 7947 0.66 0.520602
Target:  5'- ---aGUCGAGCCGgCGGGcggggaUCCCG-UCg -3'
miRNA:   3'- ggcgCAGCUCGGUgGCCU------AGGGCuAG- -5'
26305 5' -58.8 NC_005345.2 + 41136 0.66 0.514477
Target:  5'- gCC-CGUCGAgcucgugaaaccgcgGCCGCCGGuugaaCCgGAUCg -3'
miRNA:   3'- -GGcGCAGCU---------------CGGUGGCCua---GGgCUAG- -5'
26305 5' -58.8 NC_005345.2 + 15409 0.67 0.500302
Target:  5'- cCUGCGaCGGG-CACCGGcucggggaAUCCCGAa- -3'
miRNA:   3'- -GGCGCaGCUCgGUGGCC--------UAGGGCUag -5'
26305 5' -58.8 NC_005345.2 + 39380 0.67 0.500302
Target:  5'- aUGCG-CGAuGCCGCCGGuGUCCUGc-- -3'
miRNA:   3'- gGCGCaGCU-CGGUGGCC-UAGGGCuag -5'
26305 5' -58.8 NC_005345.2 + 17488 0.67 0.499296
Target:  5'- uCgGCGUCGggaaggaacugcgGGCCGCCGG-UCgCCGGc- -3'
miRNA:   3'- -GgCGCAGC-------------UCGGUGGCCuAG-GGCUag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.