miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26306 3' -52.2 NC_005345.2 + 19437 0.66 0.848386
Target:  5'- -gGUCGcaccgggcucgggcaGCAGCGCGAUCgcguuCGCCgGCg -3'
miRNA:   3'- agUAGC---------------UGUCGUGUUAGac---GCGGaCG- -5'
26306 3' -52.2 NC_005345.2 + 28934 0.66 0.848386
Target:  5'- uUCAUCGagcgacGCAGCugacgggccuuauccGCGAggcgCUGCGCgacCUGCa -3'
miRNA:   3'- -AGUAGC------UGUCG---------------UGUUa---GACGCG---GACG- -5'
26306 3' -52.2 NC_005345.2 + 19830 0.66 0.844817
Target:  5'- cUCggUGAcCGGCACGGUCgcguucacgaGCGCgCUGCc -3'
miRNA:   3'- -AGuaGCU-GUCGUGUUAGa---------CGCG-GACG- -5'
26306 3' -52.2 NC_005345.2 + 25806 0.66 0.844817
Target:  5'- cCAgCG-CAGCACGGUCUGCGggaucgcaucCUUGUu -3'
miRNA:   3'- aGUaGCuGUCGUGUUAGACGC----------GGACG- -5'
26306 3' -52.2 NC_005345.2 + 45787 0.66 0.844817
Target:  5'- aUCGcucUCGAUgcuccGCGCGAUCgaacgcgGCGCCcGCa -3'
miRNA:   3'- -AGU---AGCUGu----CGUGUUAGa------CGCGGaCG- -5'
26306 3' -52.2 NC_005345.2 + 23701 0.66 0.844817
Target:  5'- gCAcgCGAgCGGUACGGggcUCUGCGCUcGCu -3'
miRNA:   3'- aGUa-GCU-GUCGUGUU---AGACGCGGaCG- -5'
26306 3' -52.2 NC_005345.2 + 27204 0.66 0.835727
Target:  5'- -gAUCGGCAGCG-GGUCgGCGCa-GCg -3'
miRNA:   3'- agUAGCUGUCGUgUUAGaCGCGgaCG- -5'
26306 3' -52.2 NC_005345.2 + 18760 0.66 0.835727
Target:  5'- gUCGUCGA-GGUACGccucgacCUGCGCCcGCc -3'
miRNA:   3'- -AGUAGCUgUCGUGUua-----GACGCGGaCG- -5'
26306 3' -52.2 NC_005345.2 + 9154 0.66 0.834806
Target:  5'- -gGUUGACGGCGCGggugcacgggccgGUCgUGUGCgaGCu -3'
miRNA:   3'- agUAGCUGUCGUGU-------------UAG-ACGCGgaCG- -5'
26306 3' -52.2 NC_005345.2 + 36488 0.66 0.834806
Target:  5'- gCcgUGGgGGCGCAGUUcagccagUGCGCCcGCu -3'
miRNA:   3'- aGuaGCUgUCGUGUUAG-------ACGCGGaCG- -5'
26306 3' -52.2 NC_005345.2 + 5036 0.66 0.826407
Target:  5'- aCGUCGACgAGCGCAgcAUCgaggGCGagccggugugCUGCg -3'
miRNA:   3'- aGUAGCUG-UCGUGU--UAGa---CGCg---------GACG- -5'
26306 3' -52.2 NC_005345.2 + 18192 0.66 0.826407
Target:  5'- cCGUCGGCgaGGCGCGcgCcgagugggGCGCC-GCg -3'
miRNA:   3'- aGUAGCUG--UCGUGUuaGa-------CGCGGaCG- -5'
26306 3' -52.2 NC_005345.2 + 30459 0.66 0.826407
Target:  5'- -gAUCcgGGCAcgcugcGCGCGAUCUGCGUC-GCg -3'
miRNA:   3'- agUAG--CUGU------CGUGUUAGACGCGGaCG- -5'
26306 3' -52.2 NC_005345.2 + 14794 0.66 0.826407
Target:  5'- cCAUCGcgaacaguGCGGCGCcgaGGUCUuCGgCCUGCg -3'
miRNA:   3'- aGUAGC--------UGUCGUG---UUAGAcGC-GGACG- -5'
26306 3' -52.2 NC_005345.2 + 37633 0.66 0.825463
Target:  5'- cUCAuUCGugAGCggcuGCAGUCcgGCgucggugcgggccGCCUGCg -3'
miRNA:   3'- -AGU-AGCugUCG----UGUUAGa-CG-------------CGGACG- -5'
26306 3' -52.2 NC_005345.2 + 34384 0.66 0.816867
Target:  5'- gUCGUCGGCGGUcuccgcgcuggGCAAggugggCgGCGCC-GCg -3'
miRNA:   3'- -AGUAGCUGUCG-----------UGUUa-----GaCGCGGaCG- -5'
26306 3' -52.2 NC_005345.2 + 29894 0.66 0.816867
Target:  5'- cCGUCGGCAuCcCGGUcCUGCGCgaGCc -3'
miRNA:   3'- aGUAGCUGUcGuGUUA-GACGCGgaCG- -5'
26306 3' -52.2 NC_005345.2 + 47703 0.66 0.816867
Target:  5'- cCA-CGGCAGUugAGggcgaagagCUGCGgCUGCc -3'
miRNA:   3'- aGUaGCUGUCGugUUa--------GACGCgGACG- -5'
26306 3' -52.2 NC_005345.2 + 2708 0.66 0.816867
Target:  5'- -uGUCGGCGGCGCcgauGUCUccCGCCcGCc -3'
miRNA:   3'- agUAGCUGUCGUGu---UAGAc-GCGGaCG- -5'
26306 3' -52.2 NC_005345.2 + 26269 0.66 0.807119
Target:  5'- cUCGUCGACgaccAGgACGAaCgGCGCCcGCu -3'
miRNA:   3'- -AGUAGCUG----UCgUGUUaGaCGCGGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.